Ictalurus punctatus (channel catfish): 108255863
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Entry
108255863 CDS
T04658
Name
(RefSeq) zinc finger RNA-binding protein isoform X1
KO
K13203
zinc finger RNA-binding protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108255863
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108255863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DZF_N
DZF_C
zf-met
zf-C2H2_jaz
zf-U1
Motif
Other DBs
NCBI-GeneID:
108255863
NCBI-ProteinID:
XP_017307662
Ensembl:
ENSIPUG00000008192
UniProt:
A0A2D0PNT2
LinkDB
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Position
22:complement(14300130..14318415)
Genome browser
AA seq
1078 aa
AA seq
DB search
MIPICPVVSFTYVPSRLGEDAKMATGGNYFGFTHGAAAQYSQQPAAGVAYTHPTTVASYT
VHQAPVAAHTVAAAYAPTAATVAVARPAPVAVAAAATAAAYGGYQPAHATTDYGYAQRQP
EVPPPPPPVTSQNYQDSYSYVRSSAPAVAYDSKQYYQQPIATAAVAAAAAQPQPTVAETY
YQTAAKTGYSQGATPYTQTQQTRQVTAIKPATQSPATSTFSIYPVSSAVQPVAAAAAAAA
SVVPSYSQSPTYSTNAVTYSGTSYSGYEAAVYSAASSYYQQQQQQQKQAVAAAAATAAWT
GSTFTKKTPFQNKTLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKV
SQSSNSSSGGSSSARSTQNQLRCELCDVACTGADAYAAHIRGAKHQKVVKLHTKLGKPIP
STEPSVVTQTSSSTTAAPSKTASAAISSSTSSTASAMNVSSSTGSGSSYLKPLGNTAASA
MQGKSPAPSSISSTASTIKKVNAPKINFVGGNKLQTTGVKMDESKVEAAKPVQTSLGAPS
QDVKNDAPDPLSPQSALAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAK
EMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRM
EMRRYEEDMYWRRMEEEHHHWEERRRMPDGGYPQGPPGPPGLLGVRPGMPIPQPQGPVPP
RRPDSSDDRYVMTKHAAIYPSEEELQAIQKIVSITERALKLVSDIITDQDKGKEEDKDKK
EPPKDRALKGVMRVGVLAKGLLLRGDKNVNLVLLCSEKPSKSLLSRIVEHLPKQLGLVTP
EKYEVKGSVQEAAIILTSCAEPKMQVTITLTSPVIREETPRDGDVTSGMVKDPADVLDRQ
KCLDALAALRHAKWFQARANGLQSCVIVIRILRDLCQRVPTWSAFPSWAMELLVEKAISS
ASGPMSPGDALRRVFECIASGILLPGGPGLMDPCEKNPTDTLGAMEEQQREDITSSAQFA
LRLLAFRQIHKVLGMDPLPQLNPRFNVRNNRKRRRDNSDGTDGFEGEGKKDKKDFDGF
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgattcccatatgtccagtggtctccttcacctatgtgcccagccggctaggtgaagat
gccaaaatggctaccggcggcaattattttggatttacccacggtgctgctgcgcagtac
agtcagcagccggccgctggagtagcctacacccatccaaccacggtagccagctacacc
gtgcatcaggcgccagtggctgctcacaccgtagccgcggcctatgccccgactgctgcc
accgttgctgtagccagacctgcacctgtcgctgtcgcagctgcggccactgcggcagct
tacggggggtaccagcctgcccatgccaccaccgactacggctatgcccagcgccagcct
gaagtgcccccaccacctccaccggtcacatcacagaactatcaggattcctattcttat
gtccgttcttcagctccagctgtagcctatgacagtaaacaatactaccagcaacccata
gctacagcagcggtagcagcagcagctgcccaaccgcagcccacagtggctgagacctac
taccaaacagccgccaaaacaggatacagccagggtgccacgccatacacgcagacccag
cagacccgccaggttacagccataaagccagccacacagagtccagccacctccaccttc
tctatctacccagtgtcctccgccgtgcagccagtggcagctgcagcagctgccgcagcc
tccgtggtcccgtcttactcccagagccctacatacagcaccaatgctgttacatattca
ggcacgtcatattcaggttatgaggcagctgtgtactccgcagcgtcctcttactaccag
caacagcagcaacagcagaagcaagccgtcgctgctgctgcagccactgctgcctggact
ggaagcacattcaccaagaaaacacccttccagaacaaaacacttaaacccaaacagcct
ccgaaaccacctcaaatacactactgcgatgtgtgtaagattagctgtgcagggccacag
acatacaaggagcatctagaaggtcagaagcacaagaagaaggaggcagcactgaaggtc
tctcagagcagtaatagcagcagtggtggcagcagctcggcccgcagcacacagaaccag
cttcgctgcgagctttgtgatgttgcctgcaccggggcagacgcctatgctgcccacatc
cgtggagctaaacatcagaaggttgtaaaactacacaccaaactcgggaaacccattcct
tccacagagccgagtgtggtgacgcagacgtcctcatccaccactgcagctcccagtaaa
acggccagtgctgccatcagcagttccaccagcagcactgcgtctgccatgaacgtgtcc
tcctccaccggctccggttcatcctacctgaaacctctcggcaacactgcggcctcagct
atgcagggcaagagtcctgctcccagcagcatttcctcaaccgcatccacaatcaagaaa
gtcaatgcacccaagataaacttcgttgggggaaacaaattacagaccactggtgttaag
atggacgagtcaaaagttgaagcagccaaacctgtacagacctcattaggtgcaccgtca
caggacgttaaaaacgacgcgcctgatccgctgtcccctcaatcagctctcgcggctttg
cagagtgacgttcagcctgtcggccatgactacgttgaagaggttcggaacgacgaggga
aaagtcatccggttccactgcaagctgtgtgaatgcagttttaacgatcctaatgcaaag
gaaatgcatcttaaagggaggagacatcgtttgcaatataagaaaaaagtgaacccagac
cttcaggtggaagtgaagcccagcattcgagcccggaagatccaagaggagaagatgagg
aaacaaatgcaaaaggaagaatactggagacgccgtgaagaagaagagcgctggaggatg
gagatgaggcgctatgaggaagatatgtactggcgacgaatggaggaagagcaccaccac
tgggaggaaagacgtaggatgcccgatggaggctatccgcaaggtccacctggacctcct
ggtctgcttggggtgagacctggaatgcccatcccacagccgcaaggccctgtgccccca
cggcgccctgattcttctgacgatcgttatgtgatgaccaagcatgctgctatttacccc
tctgaagaggagctccaagccattcagaagattgtgtccatcaccgagcgtgccctcaag
cttgtatcggacatcattactgaccaagacaagggcaaagaagaggacaaagacaagaaa
gagcctcccaaagacagagcactgaagggagtgatgagggttggtgttctggctaaagga
ctgctcctgcgtggagataagaatgtcaaccttgttctcctttgctctgagaaacccagc
aagagtctgctgtcacgcattgtagagcaccttcctaaacaactcggactcgtaacacca
gagaagtatgaggtgaagggctcggtccaagaagctgcaatcatcttgacttcctgcgct
gagcccaagatgcaggtgaccattacgctgacctcgccagtcatcagagaggagacccct
cgggatggagatgtaacctcgggtatggtgaaagacccagcggacgtcttggacaggcaa
aaatgccttgacgctctggctgccctacgccacgctaagtggttccaggctagagccaat
ggactccagtcctgcgtgattgttattcgtatcctgcgtgacctttgtcagagagtaccc
acctggtctgcttttccaagctgggccatggaactgcttgtggagaaggcaatcagcagc
gcctctggaccgatgagccctggtgatgcactgagacgagtctttgaatgtattgcctca
ggcattctgctccctggtggcccagggttaatggacccgtgtgagaagaatccaacagat
accctgggtgctatggaggagcaacagagagaggatataacgtctagtgcccagtttgcc
cttcggctcttggcgttccgtcagatccataaggttctaggtatggaccccttgcctcag
ttgaacccacgcttcaacgtgaggaacaatcgcaagaggaggcgtgacaacagcgatggc
acagacggctttgagggtgaggggaagaaggacaagaaggattttgatggcttctaa
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