Ictalurus punctatus (channel catfish): 108255891
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Entry
108255891 CDS
T04658
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03030
DNA replication
ipu03410
Base excision repair
ipu03420
Nucleotide excision repair
ipu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108255891
03410 Base excision repair
108255891
03420 Nucleotide excision repair
108255891
03430 Mismatch repair
108255891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
108255891
03036 Chromosome and associated proteins [BR:
ipu03036
]
108255891
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108255891
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108255891
DNA Replication Termination Factors
ELG1-RFC complex
108255891
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
108255891
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108255891
Check point factors
HRAD17(Rad24)-RFC complex
108255891
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_14
RuvB_N
ResIII
AAA_lid_RFC1
AAA_24
AAA_16
DEAD
AAA_assoc_2
DUF815
nSTAND_NTPase5
PhoH
ATPase_2
AAA_7
AAA_5
TIP49
AAA_30
AAA_19
TniB
nSTAND3
AAA_2
DNAX_ATPase_lid
Thioredoxin_6
bpMoxR
Motif
Other DBs
NCBI-GeneID:
108255891
NCBI-ProteinID:
XP_017307723
Ensembl:
ENSIPUG00000019902
UniProt:
A0A2D0PMA3
LinkDB
All DBs
Position
22:complement(16537504..16545019)
Genome browser
AA seq
334 aa
AA seq
DB search
MASTSKVPLQARNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTILACAKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQTQMIPRL
EHVIQQESIDITPDGMKAIVTLSTGDMRRSLNVLQSTHMAYGKVTEETVYTCTGHPLRSD
IANILDWALNKDFTSAYNQILQLKTLKGLALHDILTELHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVREIVVSDG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaagcaaggtacctcttcaggccaggaatttgccatgggttgaaaagtac
agaccacagacgctggatgatttaatctcacatcaggacattctgagtacaattcagaag
ttcatcagcgaagaccgactgccacacctgctgttttacgggcctccgggaacaggaaag
acctccaccattttagcctgcgctaagcagctctacaaggataaagagttcaacgccatg
gttctggagctcaacgcttcagacgaccgcggtatagacgtggttcgaggccccatcctc
agcttcgccagcaccaggaccattttcaagaaaggttttaagttggtgattctggatgag
gcggatgccatgacccaggatgctcagaacgctttaaggagagtgatcgagaagttcacc
gagaacactcggttctgtctgatctgtaactacctgtctaaaatcatccctgcgctgcag
tcgcgatgcacacggttccgtttcggacctctgtcccagacccagatgatccccagactc
gagcacgtcatccagcaggagagcatcgacatcactcccgatggcatgaaggctattgtg
acgctgtcaacaggagacatgaggcgatcgttaaacgtcctacagagcactcacatggcc
tatgggaaggtgaccgaggagacggtttacacgtgcacaggacatcctctgcgctcagac
atcgccaacatactcgactgggccttgaacaaagacttcacctcagcatataaccaaatc
ctacagctgaaaactctgaaaggattagcgctgcacgacattctgaccgagctgcatctt
ctcatacacagagtggattttcctccagccattcggatgggcttgctgattaagctggcc
gacatcgagtatcgcttggcctctggaaccagtgagaagattcagctgagttcaatggta
gctgctttccaggcagttagagagatagtggtcagtgatggctaa
DBGET
integrated database retrieval system
