Ictalurus punctatus (channel catfish): 108255962
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Entry
108255962 CDS
T04658
Symbol
vcana
Name
(RefSeq) versican a isoform X1
KO
K06793
versican core protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04514
Cell adhesion molecules
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108255962 (vcana)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108255962 (vcana)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ipu00535
]
108255962 (vcana)
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108255962 (vcana)
04091 Lectins [BR:
ipu04091
]
108255962 (vcana)
Proteoglycans [BR:
ipu00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
108255962 (vcana)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
108255962 (vcana)
Lectins [BR:
ipu04091
]
C-Type lectins
Lecticans
108255962 (vcana)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
Sushi
EGF_TEN
hEGF
ig
EGF_2
Izumo-Ig
Motif
Other DBs
NCBI-GeneID:
108255962
NCBI-ProteinID:
XP_017307858
Ensembl:
ENSIPUG00000013420
UniProt:
A0A2D0PS02
LinkDB
All DBs
Position
22:complement(11253581..11287250)
Genome browser
AA seq
3196 aa
AA seq
DB search
MLLNIKHILWLLCLYSTSLASGSLIVMQPVRGSLSGKVVLPCHFSTLPTASPSNATTPGT
DYLRIKWTRVEGEVESIVIVAQNGVIKIGSGYKSRVSVPSHPEDIGDASLTVVKLRASDA
GTYRCEVMYGIEDTQDMVSLDVSGVVFHYRPKTSRYTLTYNNAVETCRSVGATIATAEQL
KAAYEDGFDQCDAGWLADQTVRYPITNPRPGCSGNLPGKPGVRSYGLRMPTETYDVFCYA
DKLEGDVFFAPTTNKMTFEESKTECEQRNATLASPGQLHSAWRKGLDRCDYGWLSDGSAR
YPVAIPRTRCGGGLLGVRTMYQFRNQTGFPDPTTKLGAYCYIGYEFLLNQTTRVDVTIEG
VTTTSPSTASSTTVQTAQSESALKPKEFIYSQTTIDDSENHPLTDSPFMFSTSMALSSSS
DSPSSQHVTAITEDLEVHDSVTTLADVKTVSETQDYGVHLVTTTAGTALPEIPSDKPEDN
KHIEIGTIPPDVLISASPSTESMFALGKTEESILEHEKKDIASDLMHTTPDLTVKPTKLI
STTIEVSQSSTAKDDTILPNVTTVHLTTITEISPTEEIQATVFGDYDSSEKGNKIGVMAG
PPPTQTFTELSDTTDGLSNDATVPFTTYTIQPDTIHSDVPTSASSTVAMPKRLTTPALSE
ILAEKSDTTKSTVEESVLCSLEGLSKSVANGKDTEDITRSPQKSKNNCTDNPFVQVIIIN
IHQQNETVQLDHLIPQIPIIPEVPSDRIPSPVYGEPIWDHEEATLDFSSPAATSTPTLSF
INGKHEVTIEPEKSYADKEARGDVFESVSSQNLSQTEEKIETTSNFDYSLVDTGATQDVT
YSMSISLSTVEPKYVYDKEQISVESTPPSFVMPDPEDKTLIEEGNLIPNTPSGITVERSF
SLKPHQPSVFPTNTTATAISEVAPSKPIDTTEEISLSIENGSGQETATIQIVQVTQESAT
LQATESDKLDHTMFATTEKKSLLPSFTDTTDITYTASNYQTIELGIKEYAFTSDTPMSAT
HQTDNMSTPEHTEKQAISKSTIMVTSSPDVERITSLKSLLITEEEGSGGEPHDLIFTKLT
LQHTVTNDFEATSPHTPLDAEIMMLQTEETLLTKPSEVNITDSSENLFSTQEEESLNEIS
AISTVSTVEKTSKYVSSGTHSETFPFSEADGSGDQSHVILTTVFPLHTTTHSEQNITTTA
VYTVQRVDETVSVKTLSEETEANQATISPSAFSSSYMETTTEPVPCSNISEEVIQEPFTA
TVPYVMSEEGSGDQSPDRHTAGETSAVHIIDASEMVTSTESSEKKTTDKCIIESISQGLP
STKSESLLLFQDTEGSGNQIIDAFATTSTTPNRDHFKSTIPMWDGTLLPHSEGTLLERTS
ESPAIAFSIPITVPSTHELTREQETTIATSTMTTSHASTLIPAFLLSDVTTLKVETHHTN
GAETEKPSSTITSKDVTSNLLEDDISGENILDRLSTASFMQVHSIATDDQHMTTRTSTQS
EAKESISTTTTRTFTVDHAQSISIESSSIEIGITPDTGEFNQNTTGTMVGTSHYKTESPF
NTRYVENSGVQISNIVSKDSHITSAPTQEIPHSEGSGEESGEFEDGVSGDFSNTVVESTP
PSQVPLTKDVLTTKSGAIMGTELAVHSTVMEVSSEFAHSTVTGTILAFTVGDGSGDQNED
ILNTVSVTSPTSITTFGVRETFTTTSSSTVTADHFSLSTSQISHLESIHNATYLMSTAID
METLGASSKDQESSILEGSADNMSETTEASKEYSVRTDEAEISYAKSTVDYSDVESATLS
TKLTSESSSQIPSSPAQTDLMSSSLESGSGDTEDTTIETEGADDNGSGDLVSTVLESSHL
HGDMKDTTSEGTEDEGIDDESSGALIESAAPSQAPTTDIITEKTNASMNIGIKDLPLAVP
TSTDLDSLTNEDNLRKQSTVTSVTLTPGTDSIYLISKHVDIDSLVSTTDVDKGTLKLFTE
DGGSGDEMLVNTPSELQKSTSATVGATMQSATSTIATGKVQLSHSTTKIFETETTEDNLE
ISTQVSLTTSLPIESSYTTLVDEVSVQTSPESLVTGTDVTTPVFSVIYQDGTDKEVTTIV
PSSNEIRSSKITARLHDTKSITSPVIIFTEEIKDEDELFSTVTDSMRDHSTKKEFINKDD
IIIDADTVSVLKPSSPFASTIITEEAAGITAVTMTPQSSSILTEEPEGSGTDSPVLPSSD
LHVPTQSLEGSTAKSIDLSSSVKAEETETKPTFSVDIIADIIQTVAPSKMMPHLSTSTNS
AQTTLYSAHSTTHYNTGKSYPSQTTLHDTYSTNQPTFTTTDSVSTTSQHSHIIPKPSHTT
TSQPKTIFHVTSTTSQSEFRTTQAMPKTSHSMLTSVLTDNFSGDHVSAEDSGMQTSIPDV
ITSTDTSSPTTLTADVNSTLHGMVSATSGYNMDKTTNSKQSVFILVSQGSVTEEGSGLIS
ELTVSSGSDVLGMAEATEHGEPRSETEIETTIHPNMEIESNTSVRTATQSDVTVQPTTIY
EVTKLVQTERVEVNDRPTTVTVTKSSEMPLFDSTRGKTSSPLLSEESSGDMFSEIFTEVS
TAVSFKVSTDHRDFSTTHSDALVSLSKETDSTTYAPPILTTSRVHPEAVFEITLTAQPTK
DTSAADDLSTTTTIPMVFMSTSENGKYTQYTQPTKQGVQSTQGIPIMDGDAISEPSLVES
VPDLFDSETFSKPESKTPLENTPVYESKTSVSSTEWPHISDKNPLQRLSTVSPLEHFTYE
TNKEEVTTVIPSSDETSPASPMQDSYDSFTSSVDKLNVSEEQKTFGQTEETAMAILKSTD
YTTSSADGIQMHSDTTASPKDISDDTILVESSDPNPEALNGTQRPRLNMDLGYTVIGEPY
DIADVHSCSDDGCMNGGSCLKRGNVQICSCLPGYTGDRCEIDIDECHPNPCRNGGTCVDG
INSFNCDCLPSYRGSLCEEDTETCSYGWHKFQGHCYRYFPHRRTWDVAERECRLLDGHLT
SILSHEEQQFINRLGHDYQWIGLNDKMFESDFRWTDGRILQYENWRPNQPDSFFSSGEDC
VVMIWHEDGQWNDVPCNYHLTFTCKKGTVSCSQPPVVPNARTFGQMRPRYEINSLVRYQC
MDGFIQRHLPTIRCKGDGSWDLPKISCMNPSNFQRRYSRWYQHIRIYGSHRKRSAEKPAS
SPQKHHHHAFKDNRTK
NT seq
9591 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgaatataaaacatatactgtggttattgtgcctatacagcacatcgctggct
tcaggctcactaatagtgatgcagccagtgagggggtctctttcaggaaaggtggtcttg
ccgtgccacttttccaccctccctacagcatctcccagcaatgctacgacccctggaaca
gactatctgcgcattaaatggaccagggtagagggtgaagtggagtccatagtaatcgtt
gctcaaaatggtgtcattaaaattgggtcaggctacaaaagccgtgtatctgtgccgagt
cacccagaggatatcggggatgcttcattgactgttgtgaaactgcgagctagcgatgcc
ggaacttaccgctgtgaggtcatgtatggcattgaagacactcaagacatggtcagcttg
gatgtcagtggtgttgtctttcattatcgtcccaagaccagtagatacaccttgacctac
aacaacgctgtggagacctgtcgaagtgtcggggctacaattgccacagcagaacagcta
aaagcggcttatgaggatggttttgatcagtgtgatgctggttggttagcagatcagaca
gtgagatacccgatcactaacccaaggcctggctgctctgggaacctgcctggaaaacct
ggtgtccggtcatatggccttcgaatgcccactgagacgtatgatgtgttctgctatgca
gataaacttgagggtgatgtattctttgcacctaccacaaataagatgacattcgaggaa
tcaaagactgagtgtgagcaaagaaatgctaccttggcctcacctggtcagctccactca
gcctggagaaaaggtttagatcgctgtgactacggatggctgtctgacggaagtgcccgc
taccctgttgccatacccagaacacgatgcggtggaggtctgcttggagttcgcaccatg
taccagttccgcaaccagacaggctttcctgaccccaccacgaaactgggagcctactgc
tacataggttatgagtttctactcaaccagacaacaagggtggatgttacaattgagggt
gtcaccacaacctcaccctctacagcctcttcaaccacagtccagactgctcaatctgag
tccgccctcaagccaaaggaattcatttactcacagaccaccatagatgactctgagaac
catcccctgacagactcgcctttcatgttttccaccagcatggccctatcaagcagttct
gactcaccaagtagccaacatgtaacagctatcacagaggatttagaagtccatgactca
gtaaccactcttgcagatgttaagactgtgtcggaaactcaagattatggagtgcactta
gtaaccacaacagctggtactgctcttcctgagattccttcagacaaaccagaagataac
aaacacattgaaataggtacaattccacctgatgttttaatctcagcctctccaagcaca
gagtcaatgtttgcactgggtaaaacagaggaatctattctggaacatgagaaaaaagat
atagcctctgatctcatgcacactacccctgatctgacagtaaaacccacaaagttaatc
agcacgactattgaggtttcacaatctagtacagcaaaagatgacactattctgcctaac
gtcaccacagttcatcttaccaccataactgagataagccctacagaggaaattcaagct
acagtgtttggtgattatgacagcagtgagaaaggcaataaaattggagttatggctgga
ccgcctcccacacaaacattcactgaactttcagataccacagatggacttagtaatgat
gcaactgtcccattcacaacctatacaatacaacccgatacaattcattctgatgttccc
acatcagcatcatctacggttgccatgcctaagaggctaacaactcctgcactcagtgaa
atactggctgagaaatcagatacaactaagtcaactgtagaagaatcagtattgtgtagt
ctagaaggcctaagtaaaagtgtggcaaatggcaaggatacagaagacatcacacgttct
cctcaaaaaagcaagaacaattgtacagataacccatttgtccaagtgatcatcattaac
attcatcagcagaatgaaacagttcaactggaccatctgataccccagattcctattatt
cctgaggttcccagtgatcgcattccttcccctgtgtatggtgagcctatttgggatcat
gaagaggctactttagacttctcctctcctgcagccacctccacaccaacacttagtttt
ataaatggcaaacatgaggtgaccattgagcctgagaagtcttatgctgataaagaggca
agaggagatgtgtttgagagtgtatcctctcaaaacctatcacaaacagaagaaaaaata
gagacaacatccaattttgattactcactggtagacactggtgcaacacaagatgtaaca
tattcaatgtccatttccctcagcacagtggagccaaaatatgtttatgacaaagaacaa
ataagtgtagagtccactcctccatcatttgtaatgccagatcctgaagataagactctc
atagaggagggaaacttaataccaaatactccatctggtatcacagttgaaagaagcttc
tcactaaaaccacatcagccatctgtgttcccaacaaatacaactgcaacagctatctca
gaggtggcaccttctaagccaatagacacgactgaggaaatttctctttctattgaaaat
gggtctgggcaggaaacggctactattcaaattgtacaagtgacacaggaaagtgcaaca
ttgcaagcaacagaaagcgacaaattagaccatacaatgtttgcaaccactgaaaagaaa
tcattactgccctcttttactgacaccacagatattacctacacagcctcaaactaccag
acaatagagttgggaatcaaagagtatgcttttacttcagacacacccatgtctgcaaca
catcagacagacaatatgtccacacctgaacacactgaaaaacaagctatttcaaaaagc
acaattatggttacatcttcaccagacgtagaacgcattacttcactaaaatccttgctt
ataactgaagaagaaggatcaggtggtgaaccccatgatttgatttttacaaagcttaca
ttacagcatactgtgacaaatgattttgaggccacatcaccacacacacctctggacgca
gaaattatgatgctccaaacagaagaaacattattaacgaaaccatcagaagttaatatt
actgattcctcagaaaacctattctccacacaagaagaagaaagtttaaatgaaatatca
gctataagcactgtgtctacagtggagaaaacaagtaaatatgtgtcatcaggtacacat
tctgaaacctttccattttctgaagctgatggctcgggagatcagtcgcatgttatattg
acaacagtttttccattgcatactacaacccactctgaacaaaatattaccacaacagct
gtttatacagttcagagagttgatgaaacagtgtcagtgaagactctttcagaggaaacg
gaagcaaatcaggctactatttctccttcagccttttcaagtagctacatggagacaaca
acggaaccggtgccatgtagcaacatttctgaagaagtcatacaagaacccttcactgcc
acagttccatatgtgatgtcagaggaaggctcaggtgatcagagtcctgacagacacaca
gcaggagagacatctgcagtgcatattattgatgcctctgaaatggtcacctcaacagag
agctcagagaagaaaacaactgataaatgtattattgagtccataagtcaaggtttgcca
agtacaaaatcagagtcactattgctcttccaagatacagaaggttcaggtaatcaaata
attgatgcatttgccacaacatccacaactcctaacagagatcatttcaagtccacaata
ccaatgtgggatggcacactgttacctcactcagaaggcacattattggagagaacatca
gagagcccagccattgcattcagtattccaattacagtcccctctacacatgagcttacc
agagagcaagaaactactatagcaacaagtacaatgacgacaagtcatgcatccacactg
attcctgcctttttgttgtcagatgtaactacactaaaagtggaaacacatcacacaaat
ggagcagagactgaaaagccatcatcaaccataacaagtaaggatgtcacctcaaactta
ttagaggatgatatttctggtgagaacattcttgataggttgagcacagcctcttttatg
caagtgcatagtatagccacagatgaccagcacatgacaacaagaacatcgacacaaagt
gaagcaaaagaaagtatttctactactacaacaagaacatttacagttgaccatgcacaa
tcaatctcaatagagtctagctcaatagagataggaataacaccagacactggtgaattc
aaccaaaacacaactggcacaatggttggaactagccattacaaaacagagtcacctttc
aatactagatatgtagaaaactcaggggttcaaatctcaaatatagtttccaaggactca
catattacttcagctccaacccaagagataccacattcagagggttctggtgaagaaagt
ggagagtttgaggatggtgtttctggtgatttctctaatacagttgttgagtccactcct
ccttcacaagttccattaacaaaggatgtattaacaacaaaatcaggggccattatggga
acagagttggcagtacactcaactgttatggaggtatcatcagagtttgcccactcaaca
gtgacaggtacaatccttgcctttacagttggtgatggttctggggaccagaatgaagac
atcctcaacactgtatctgtcacctcaccaacttctattacaacatttggtgtcagagag
acattcacaactactagcagttcaactgtaaccgctgaccatttttcattaagtacgtct
caaatatctcacttagagagtatacataatgccacatatttaatgtcaaccgctatcgat
atggaaacgttaggggcctcaagcaaagatcaagagtcttccatacttgaaggatctgct
gacaatatgtcagaaacaactgaagcaagtaaagaatattctgtaagaactgatgaggcg
gaaattagttatgcaaagagcacagtagattactcagatgttgaatccgctacactttcc
acaaagttaacatcagaatcttcttcacaaattccttcaagcccagcacaaacagatttg
atgtcttcttctttggagtctggtagtggtgacacagaggacactactattgaaactgaa
ggtgctgatgataatggatctggtgatctagtatccactgtccttgagtcatctcatctt
catggtgacatgaaggatactacatctgaaggcactgaagatgaaggcattgatgatgaa
agttctggtgctcttattgagtctgctgctccttcacaagctccaacaacagatataata
acagaaaaaacaaatgcatcaatgaacataggtatcaaagacctgccattggctgttcct
acttcaacagatttggattctttaacaaatgaagataatttgcgtaaacagtcaactgta
acaagtgtgacactgacgccaggaacagattcaatctatctgatatcaaagcacgttgac
attgattctttagtttcaacaacagatgttgacaaagggacactgaaactttttacagag
gatggaggttcgggtgatgaaatgctagttaatacccctagtgaattgcagaaatctaca
agtgccactgtaggagcaactatgcaaagtgccacatccaccatagctactggaaaagtt
cagttgtcccacagtacaacaaagatttttgagactgagaccacagaagacaatttagaa
atttctacacaagtttccctaaccactagtttgcctatagagagttcatatactacactt
gtggatgaagtcagtgtccaaacttcacctgagtcattagtgacgggcacagatgtgact
actccagttttctctgtcatataccaagatggtacagataaagaagttacaacaattgtc
ccatctagcaatgagatcagatctagcaaaattaccgcaagacttcatgataccaaatca
attacaagccctgttatcatattcacagaagagataaaagatgaagatgaacttttctca
acagttacagacagcatgagagaccatagcaccaaaaaagaatttatcaacaaagatgat
ataatcattgatgcagatactgtttcagtgttgaaaccctcatcaccttttgcctccact
atcatcacagaggaagcagctggcataacagctgtcaccatgacacctcaatcctccagc
atactgacagaggaaccagaaggttctggaacagacagtcctgttttaccatcctcagat
ttacacgtgcctactcaatcattggaagggtcaacagctaaaagcatagatttaagcagc
tcagtaaaagctgaggaaacagaaacaaaaccaacattctctgtagatatcattgctgat
atcattcaaactgtggctccttcaaagatgatgccacacttatccacatccacaaattct
gctcaaacaaccctgtattccgctcatagtactacacattacaacactggaaaatcctat
cctagtcagaccaccttgcatgatacctacagcacaaatcaacctacatttaccaccact
gattctgtttccactaccagtcagcacagtcacatcatccctaaacccagccatacaacc
accagtcaacctaagaccatctttcatgtgacctctaccacatcacagtctgaatttaga
actacacaggcaatgcccaagacatcacattctatgttgacgtctgttttgactgataat
ttctcaggagaccatgtctctgctgaagactctggaatgcaaacttcaataccagatgtc
attacatctacagatacaagttcacccacaaccttaacagcagatgttaattctacttta
catggaatggtatctgcaacctctggatataatatggataagaccaccaactctaaacaa
tcagtgtttattttagtctcccagggaagtgtaacagaggaaggctcaggtctcatatca
gaacttacagtgtctagtggatcagatgtacttggtatggcagaggctacagagcatggt
gaaccaagatcagaaactgagattgagaccaccatacatccaaacatggagattgagagt
aatactagtgttagaactgctacacaatctgatgtcacagtacaaccaaccaccatatat
gaggtaacaaaattagtgcaaactgaaagagttgaagtgaatgataggccaacaacagtg
acagtaacaaaaagctcagagatgccattatttgattcaaccagaggaaagacatcaagc
ccattattatcagaggaaagctcaggtgatatgttttctgaaatcttcactgaagtatca
acagctgtctcttttaaagtgtcaacagatcacagagacttttccaccactcattcagat
gcattggtatcactatctaaagaaactgatagtacaacctatgcacccccaatactcaca
acatcaagggtccaccctgaagcagtgtttgaaattacacttacagcccagcctactaaa
gatacctcggcagcagacgatttgtcaacaacaacaactattcccatggtgtttatgtcc
acttcagaaaacggcaagtatactcagtatacccaacccacaaagcaaggtgtgcagtcg
actcaaggcataccaataatggatggtgatgccatatctgaaccttctttagtagaatca
gtaccagatttgtttgattctgagactttctcaaagcctgagagtaagactccccttgaa
aacactccagtatatgagagtaagacatcagttagcagcactgaatggccacacatttca
gacaaaaatcctttacagaggttatccactgtgtcacctttggagcactttacttatgaa
actaacaaagaagaggtaaccactgtcataccgtcatctgatgagacatcaccagcatca
ccaatgcaagactcttatgattcattcacttcatctgtagataagttaaatgtgtcagag
gaacaaaaaacatttggtcaaactgaggaaactgcaatggcaattctgaagagtacagac
tacaccacatcatccgctgatggaattcaaatgcattctgatacaacagcttctcctaaa
gatatttctgatgacactatattggttgagagctcagaccctaatccagaagcactgaat
ggaacacaaagacctagactgaacatggacctaggatacacagttattggagagccatat
gatattgcagatgtccattcatgctctgatgatggatgtatgaatggtggctcatgtttg
aaaaggggtaatgtccagatttgcagctgcctacccgggtacactggtgaccgttgtgaa
atagatattgatgagtgccaccccaacccatgtcgaaatgggggtacctgtgtagatggg
atcaactcttttaattgtgattgtctaccaagctacagaggatctctctgtgaagaagac
acagaaacgtgcagttatggttggcataagtttcaaggccattgctacaggtatttccct
cacagacgcacctgggatgtagcagagcgtgaatgtcgtcttctggatggtcatcttact
agtattctgtcccatgaagaacagcagtttatcaaccgccttggccatgactaccagtgg
atcggactgaacgataagatgtttgaaagtgatttccggtggacagatggccgtattttg
caatatgagaactggagacccaatcagccagatagtttcttctcttctggagaggactgt
gtagtaatgatctggcatgaggatggccagtggaatgatgtcccatgtaactaccacctc
acctttacctgcaagaaaggcacagtgtcgtgcagtcagccacctgtggtgccaaacgct
cgtaccttcgggcagatgcggcctcgctatgaaatcaactcgctagtgagataccagtgt
atggacggcttcatccagaggcaccttcccaccattcgctgcaaaggagatggctcctgg
gacctgcctaaaatttcttgcatgaatccctccaacttccagagaagatacagccggtgg
tatcaacacatcagaatttatggcagtcatcggaaaaggtctgcagagaagcctgccagt
tccccccagaaacaccatcaccatgccttcaaggacaacagaaccaaataa
DBGET
integrated database retrieval system
