Ictalurus punctatus (channel catfish): 108256029
Help
Entry
108256029 CDS
T04658
Name
(RefSeq) DNA topoisomerase 3-beta-1 isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03440
Homologous recombination
ipu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108256029
03460 Fanconi anemia pathway
108256029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
108256029
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108256029
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
108256029
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Topoisomerases
108256029
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
108256029
FA (Fanconi anemia) pathway
108256029
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
HepT-like
Motif
Other DBs
NCBI-GeneID:
108256029
NCBI-ProteinID:
XP_017307988
Ensembl:
ENSIPUG00000020373
UniProt:
A0A2D0PN12
LinkDB
All DBs
Position
22:16191506..16209656
Genome browser
AA seq
861 aa
AA seq
DB search
MKTVLMVAEKPSLAQSIAKILSKGGCSSRKGLNGACSVHEYTGFFMGQGARFKMTSVCGH
VMSLDFTGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEAKGCDIVVLWLDCDK
EGENICFEVLDAIQPVMNTPYSNERTVYRAKFSSITDTDICNAMNQLGEPNKNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVIQAKVFKGKESPITLDWDRVRVFDREIGHMFVNMAKSARETLVESVTKKEKAKQRPLA
LNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLRQQANC
SYWAETVRALITDGINRPRKGVDAGDHPPITPMRAATESELGSDGWRLYEYITRHFIATV
SHDCKYLQTTIAFQIGTEGFSCTGKALLSAGFTEVMPWQGIALEEALPSCEKGDAFTVDE
IKLLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVENGRKLKPTNL
GIVLVHGYYKIDAELVLPTIRSALEKQLNLIALGKANFHQVLQHTLDIFKRKFHYFVDFI
AGMDELMEVSFSPIAATGKPFSRCGKCHRYMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDEFELVLWTSGSRGKTYPLCPYCFSNPPFRDMKKGMGCNECTHPSCPHSLNS
LGIGQCVECETGVLVFDPNSGPKWRMACNKCTVVVHFFEQAHKVQVSQESCESCEASLVM
VDFHKAHSPLADGETQHTGCVFCDPIFQDLVELKHAAMRHPMHRGGGARRGRGRGRGRRP
GGRGNPKKPKDKMAALAAYFV
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagtactgatggtggctgaaaagccctctctggctcagtccatcgccaaaatc
ctctctaaaggcggctgttctagccgtaaaggtctgaacggagcatgctcggtgcacgag
tacacgggattcttcatgggccagggcgcgcgctttaagatgacgtcagtttgcggtcac
gtcatgagtctggatttcacagggaaatacaataactgggataaagtggatcctgccgag
ctcttcagtaaagcaccgaccgagaagaaagaagccaaccctaaactcaacatggtcaaa
tttctacaggttgaagccaaaggttgtgacattgttgtcttgtggctggattgtgataaa
gaaggagagaacatctgttttgaggtcttggatgccatacagccggtgatgaatacgccc
tacagtaacgagcgcactgtgtaccgtgccaagttcagctccatcacagatacagacatc
tgtaatgccatgaaccagctgggagaacccaataagaacgaggctctgtctgtggacgct
cggcaggaactggacctccggatcggctgtgctttcacacgattccaaaccaagtacttt
cagggaaaatacgggaacctggactcctctctgatctcgttcggcccatgccagacccca
acgctgggcttctgtgtggagcgacatgacaagatccagtccttcaaacctgagacatac
tgggttatccaggccaaggtgtttaaagggaaggaaagtccgatcactctggattgggat
cgcgtgcgggtgtttgaccgagaaattggacacatgtttgtcaatatggcaaagtcggct
agagaaaccctggttgagtcggtcactaagaaagagaaagccaagcagagacctctggcc
ttgaacacagtggagatgttaagagtggctagctctgctttggggatgggtcctcagcac
accatgcagattgccgagcgcttgtacacacagggatacatcagctaccctcgcactgag
accacccactaccctgagaactttgacctcaaggggacgctaaggcagcaggccaactgc
tcttactgggccgagacggtgagagcactaatcactgacggcattaaccgacccaggaaa
ggtgtagatgcaggagatcatcctcccatcaccccgatgagggctgccactgagagcgag
ctcggaagtgatgggtggcgtttgtacgagtacatcacacgtcacttcatagccacggtc
agtcacgattgcaagtacctgcagaccactatcgctttccaaatcggcactgagggattc
tcctgcaccggcaaagctcttctttctgcaggttttacagaggtgatgccgtggcagggt
attgctctcgaggaggctttaccatcatgcgagaaaggagatgcatttacagtcgatgag
attaaactgctggagaagcagacgagcccacccgactacctcaccgaggctgagctcatc
acactcatggagaaacacggcatcggtactgatgctagtatccccgttcacatcaacaac
atctgtcagaggaattatgtaaccgtggagaacggacgcaaactcaaacccaccaatctg
ggaattgtcctggtgcatggctactacaagatagatgcggagttggtattgcccactatc
cgcagtgccttggagaagcaactgaatcttattgctttgggcaaagcgaacttccaccag
gtactgcagcacacactggacatctttaagaggaagttccactactttgtcgatttcatc
gctggtatggatgagctgatggaggtgtccttctcgccgatcgctgctacagggaagccg
ttctcacgctgtgggaagtgccatcggtacatgaagtatattcaggccaagccgagccgt
ctgcactgttcacattgtgatgagacgtacagtctgccccagaatggagccatcaaactc
tacaaggagctcaggtgtcctctggatgagtttgagttggtgctgtggacatcgggctcc
cgcgggaaaacttacccgctgtgtccctactgcttcagcaaccctcctttcagagacatg
aagaaaggtatgggctgtaacgagtgcacccacccttcctgtccacactctctcaactcg
ctcggcattggtcagtgtgtggagtgtgagacaggcgtgctcgtcttcgaccccaactcc
ggccctaagtggcgcatggcctgcaacaagtgcactgtggtggtacatttcttcgagcag
gcccataaggtgcaggtttctcaggagagctgcgagtcatgcgaggcttctctggttatg
gtagacttccataaagcgcactcgcctctagccgacggagagacgcaacacaccggctgt
gttttctgcgatcccattttccaggatctggtggagctcaagcatgcagccatgcgacat
cctatgcacagaggaggcggggcccggagaggaagggggcggggcagagggaggaggcct
ggaggacggggcaatcctaaaaaaccgaaagacaaaatggctgccctggctgcatatttt
gtataa
DBGET
integrated database retrieval system
