Ictalurus punctatus (channel catfish): 108256032
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Entry
108256032 CDS
T04658
Symbol
col27a1b
Name
(RefSeq) collagen alpha-1(XXVII) chain B isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108256032 (col27a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108256032 (col27a1b)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108256032 (col27a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
GH131_N
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
108256032
NCBI-ProteinID:
XP_017307992
UniProt:
A0A2D0PPR4
LinkDB
All DBs
Position
22:complement(9571132..9644216)
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AA seq
1694 aa
AA seq
DB search
MEPDNAPHSKLRQAGVGGRILFVCTVLYCTCYLGLAQVQLEDVDILQKLGLVGKRPSSGT
RSTPLGVIPFKSGVILTQRVRIEVPVNTVVPVPLSTEFSLIFSICSHRINNAFLFTIVSK
RKRLQLGVQFIPGKIVVYVGQKNSVYFEYDIHNGQWHNLALGIQPQRVTLYTSCGKTSVH
ANLHFKNEEALDPDGFFLLGKMSQNSVQFEGAICQFDIHPSAKAAHNYCKYIKKQCREAD
TYRANLPPLLPLLRLDPNISVTLRTPMTITELIKKGFTPSLSQDKTRINTEISGGVNTSI
QMTSQYGSLSLSVHGTVPPRLSRPNLQIPTQAKTPTVTPFLSTSVSQTFPKPTQKSSPKK
GVTIKPHKSKDNYMPVTAKPTIKKLESVQPSAATKPSSILPNSKRQLTTIAVKRSIPEVT
TFQYAKPNSFAPVTPAATDGFQTSDLEPTQFSFLAGPPGLPGLKGEPGPPGPPGDPGKPG
FPGKRGPRGPPGPHGIPGRPGPKGLKGRKGDPGLSPGRAPNGAKGDPGIMGPPGLPGQAG
RQGQKGHPGPPGHPGEPGDQGPDGNPGAKGYPGRQGLPGPIGNTGPKGVRGFIGMPGLFG
LPGPDGERGTPGVPGKKGKMGRPGFTGDFGERGPPGPDGNPGELGPPGPSGVLGLIGDMG
PLGIMGLPGPDGPKGVSGNPGEPGLKGDKGEIGLPGEPGEPGFQGDKGIQGLPGMPGIRG
KPGPQGKPGDHGPDGLSGPPGPEGFPGDIGPPGQNGPEGPKGKSGATGIPGPRGAPGLEG
DEGPVGPAGPLGLEGRPGTKGFSGKPGADGPQGEPGVTGNVGMLGERGLEGFKGPPGETG
LPGEKGARGETGQPGPPGENGAMGHTGIPGERGPPGPPGIPGPLGSRGLSGTRGPKGRRG
PRGPEGPPGENGSVGRKGLDGPPGKLGLTGQKGKIGEPGEAGPPGFPGIQGPSGIPGAKG
IPGMPGPSGPSGTIGPLGEIGLMGLPGKVGEVGLPGELGEKGAVGPPGNIGEPGLIGIRG
EHGLSGETGQSGLDGAKGEKGDMGVEGEQGEKGEMGLKGKEGPPGDPGLVGVRGPEGKPG
KIGERGKPGEKGHKGHQGHIGETGPVGERGPVGFPGSKGNRGTIGFVGAPGKMGLEGNLG
LKGYEGHQGTQGPIGPTGPKGAKGEPGDDGKIEGPAGPPGDIGPVGPRGVRGEPGDPGYP
GQQGIDGERGKPGAPGLPGNPGPRGILGSKGSKGDRGPKGKKGARSESGSRGPPGPIGPP
GPRGVVGREGPEGSPGMDGAPGKDGPKGMPGEQGSDGEVGLPGKTGPHGQTGQPGLQGSQ
GSFGPKGERGPPGEIGPIGKRGIHGTMGMQGKSGNHGVKGQPGDPGERGLSGPLGHFGPK
GPPGDAGPAGIQGPRGPQGLMGSRGAIGPVGIIGPSGYPGPHGDKGSRGEMGVPGPRGPP
GPRGPPGPPGPPASSLSLKSEALGAAFQVIFDSYSALRSETYSDIDIPMLDQGTEIFKTL
HYLSNLIYSIKNPLGTQENPARMCRDLLDCEHRVKDGTYWIDPNLGCSSDTIEVTCNFTG
RGQTCLRPLTTSKLEMGVGVIQMNFIHLLSSEAVQLLTIHCLNVSVWAEGASKPPSHNAV
SFKAWNGEIIKARGLIRPELLKDECWMTDGRWHQTQFLFQTQEPNLLPIVDVLNLPNKKA
GFNYHLEVGPVCFI
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggagccggataatgccccgcactccaaactcagacaggctggagtcggggggagaatc
ttatttgtctgcacggtcctctactgtacttgctatctagggttggcccaggtgcagctt
gaagatgtggatatcctccagaagctgggcctggtgggaaaaagaccttcatcagggaca
cgatccactccattaggcgtaattcccttcaagtcaggagttatcctcacccagcgggtg
cgaatcgaagtgcctgtgaacacagtggtgccagtcccactgagcacggagttctccctg
atcttcagcatctgctcacatcgcatcaataatgctttccttttcaccattgtgtcaaag
aggaagagactacagctaggggtgcagttcatccctgggaaaattgtagtctatgttggc
caaaagaactctgtatattttgaatatgacattcataatggccagtggcacaacctggct
ttgggcatccaaccccaaagggtcactttatatacttcttgtgggaagacaagtgtacat
gcaaatttgcattttaaaaatgaggaagctctggatccagacggcttctttcttttaggc
aaaatgagccagaactcagtgcagttcgaaggagccatctgccagtttgacattcatcct
tctgccaaggcagctcacaactattgtaagtacattaaaaaacaatgcagggaagctgac
acctatcgagcaaacctaccgccacttttgccactgctgcgcctggatcccaatatctct
gtcactctacggaccccgatgaccataactgagctaatcaaaaaaggttttactcccagc
ctgtcacaggataaaacaaggatcaatactgaaatctcaggaggagttaatacgtccatt
caaatgacatcccagtatggttccttgtctttgtctgtgcatggaacagtaccaccaagg
ttgtccagaccaaaccttcagattcccacacaggccaaaacaccaactgttacccccttc
cttagcaccagcgtatcccaaacattccccaagcccacccagaagagcagtcccaaaaag
ggggtaactataaaaccccataaatcaaaagataactacatgcctgtcacagcaaaacca
accataaagaagttagaaagtgttcaaccttcagcagctaccaaaccgtccagcattttg
cccaactcgaaaaggcagctgactactatagcagtgaagagatccattccagaggtgacc
acctttcagtacgccaagcccaactcttttgcacctgtcacccctgcagcaacagatggt
tttcaaacatctgacctggaaccgacacagttttccttcctggctggaccacctggacta
cctggactaaagggagagccaggaccaccgggacctccaggggaccctgggaagcctgga
tttccagggaaaagagggcctcggggtcctccaggtccacatggaatcccaggtcgccca
gggcctaaaggactcaagggaagaaagggggaccctggactctcccctggcagagcgcca
aatggagcaaaaggggaccctgggataatgggaccacccggactacctggacaagccggt
cgacaaggacaaaaaggtcatcctggtccacctggccatcctggagagcctggagaccaa
gggccagatggaaacccgggtgccaaaggttatcctggcaggcaggggttgccagggcca
ataggaaatacaggaccaaaaggagttcggggttttattggaatgccagggctctttggt
ctcccaggacctgatggagaaagaggtactcctggtgttcctgggaagaagggcaagatg
ggtaggccgggctttactggggattttggcgagcgaggaccaccagggcctgacggaaat
ccaggagaactaggtccacctggtcctagtggggtacttggccttattggggacatggga
cctcttggaatcatgggtcttcctgggcctgatggacccaagggggtatcagggaatcca
ggagagccaggactgaaaggtgataagggggaaattggtttgccaggagagcctggagag
cctggattccaaggtgacaagggtattcagggtttgccgggaatgccaggcatccgaggg
aagccagggccacaggggaaacctggagatcatggaccagatggtttatctggccctcca
ggcccagagggatttccaggagatatcggaccaccaggacagaatggcccagaaggccca
aaggggaagtcaggagcgacgggcatacctggtccaagaggagcacctggacttgaggga
gatgaaggaccagttggacctgccgggcccctaggactggagggtaggcctgggaccaag
ggattctcaggaaaaccaggagcagatgggccccagggcgagcctggagtaactggaaat
gttgggatgcttggagagaggggacttgaggggtttaaagggcctcccggtgagactggg
cttcctggagagaagggagctcggggagagactgggcagccagggccacctggagaaaat
ggagcgatgggacacacaggaataccaggtgagaggggaccacctggaccaccaggaata
cctggccctcttggttctaggggtctcagtggcactagaggacccaaaggcagaaggggg
ccaagggggcctgaaggaccacctggggagaatgggtcagtggggcgcaagggtctggat
ggtccaccagggaaattgggtttaacaggccagaagggaaaaatcggtgaaccaggggaa
gctggaccaccaggattcccaggtatccaaggaccctccggaataccaggagcaaaggga
atcccaggaatgcctggaccttcagggccatcaggaacaattggccctttgggtgagatt
ggcttgatgggcctacctggaaaagtcggggaagtgggcttacctggagaacttggagag
aagggagctgttgggcctcctggaaacatcggtgaacctggcttgattggaataagaggc
gagcatgggctcagcggagaaaccgggcagagcggccttgatggagccaagggcgaaaag
ggggacatgggagtagagggcgagcaaggagaaaaaggagaaatgggactgaaaggaaag
gaggggccacctggagatcctggcctagttggcgtcaggggtcctgaaggcaaacctggc
aaaattggtgaaaggggaaaaccaggagagaagggtcacaaaggtcaccagggtcacatt
ggcgagactggaccggttggtgaacggggtcctgtgggtttcccaggatcaaaaggaaac
agaggaaccattggatttgtgggtgcaccaggaaaaatgggccttgaaggaaatctgggc
ctgaaaggatatgaaggacaccagggaactcaaggtccaattggccccacaggaccaaaa
ggtgcaaagggtgaaccaggggatgatgggaagattgaaggccctgctggtcctccaggt
gacatcggccctgttggtccaagaggggtcagaggagaaccaggtgaccctggctaccca
ggtcagcaaggaatagatggagaaaggggcaaacctggagctcctggattacctggaaac
cctggtccaagaggcattctgggatccaaaggatccaaaggcgatcgaggcccaaaaggc
aaaaagggtgctcgaagtgaatctggcagcagagggcctcctggtcctattggtccccct
ggtcccagaggtgtcgttggtcgagaaggacctgagggaagtcctggcatggatggagct
cctggaaaagatgggcctaaaggaatgccaggggagcagggaagtgatggagaagtgggt
ttacctggaaagacagggccacatggccaaacagggcaacctggcttacaagggagtcaa
ggatcctttggaccaaagggtgagagaggcccaccaggtgagattggacctattggcaag
cgtggaatccatggaaccatggggatgcaagggaaatcaggcaaccatggagttaaaggc
caacctggcgatcctggcgagaggggattgtctggacctcttggacactttggacctaag
ggtccacctggtgatgctggtcctgctggtatccagggaccacgaggaccacagggtttg
atgggatcgagaggtgccatcggaccagttggaatcatcggacccagcggttatccagga
cctcacggggacaaaggaagtcgaggggagatgggggtaccaggaccaaggggccctcct
ggacctcgtggcccaccgggacccccaggtccccctgcttcttctctgtctcttaagagt
gaggcacttggtgctgcttttcaagtcatatttgattcctactctgcactgaggtctgag
acatactcagacatagacattcccatgctggaccagggaaccgagatctttaagaccctt
cactacctcagtaacctgatctacagcatcaagaacccactgggaacgcaggagaaccca
gccaggatgtgccgggacctgctggactgtgagcacagagtgaaagatggcacttattgg
attgacccaaacctgggatgctcctctgacacaattgaagtcacctgcaacttcacaggc
agaggtcagacttgcctgaggccgctcactacatccaagttagagatgggtgtaggagtg
atccagatgaacttcattcacctgctgagctcagaggcagtgcagcttctcaccatccac
tgcctgaacgtgtctgtgtgggcagaaggggcatccaaacctccatcccacaatgctgtg
agcttcaaggcctggaatggagagataatcaaggctagaggactcattcggcctgaactg
ctaaaggatgaatgctggatgacagacggacggtggcatcagacccagttccttttccag
acacaggagcccaacctgttgcctatagtcgatgtgctgaacctcccaaacaaaaaagca
ggctttaattatcacctggaggtggggcctgtgtgcttcatatag
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