Ictalurus punctatus (channel catfish): 108256154
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Entry
108256154 CDS
T04658
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease 1 like 1
KO
K04987
polycystin 1L1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ipu03037
]
108256154
04040 Ion channels [BR:
ipu04040
]
108256154
Cilium and associated proteins [BR:
ipu03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
108256154
Ion channels [BR:
ipu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108256154
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
REJ
PKD
PLAT
PKD_4
PKD_channel
Polycystin_dom
Ion_trans
Motif
Other DBs
NCBI-GeneID:
108256154
NCBI-ProteinID:
XP_053530662
UniProt:
A0A9F7R032
LinkDB
All DBs
Position
23:complement(2144038..2195298)
Genome browser
AA seq
2200 aa
AA seq
DB search
MSLQRPRLLDVVPTIQHAAALALGRPANYNDDLSEAPGKGDVLPQPLCWMEVNVASVEAL
IEYLVTPPNAMLHTLKDTSSCYSVWIYTEKQAYATREDIKFLAMTEDPHPLEFDWHFGDQ
RAVRTPSRTFITKYLHPDRYNVTVSMSSSLGCAISDVYTVVIQRAVHLNRLLYTRSVLMN
TTVPFSCRTNAGTDITYLWDFGDGTRRVGQDTEHHVFNSTGEFVVEVTVSNLVSSASLKG
HVFVVLEPCQPPPVKNMGPSKIQVWRYQPVCIGVTYEGQIQCNISKGVRYSWTLYGPTGL
QLTTTGIKTNQQHLELPEYLLQYGTYRAVAKVQVVGSIVYSTYSVLLEVMPSAPVSIISG
GTNVFINRHNSNSNITLDGRRSYDPDFPDNIMSYSWKCRPVNTAKTSCFSKHVPASSALL
IFPASALNSNCDLFKLTLTVQSGNRSSSSEMFITVRSKPTSNIIHVSCKECRGNSVNWNE
KLSVTAACENCSVNVTYSWKLYLVNASSKRIPEVRFCGSLDISLPSKLEEDTRFFQQPAT
SASPSILNQIETSRGNEIKITHDSVVSWPRQGHSVENQNPSFLDLLSEIDSASDYEDFYS
GIEEADSGVSLGRPTGRHALSFXHSHALIIAIEIEYEGDNLVGPVNLGHVVSEKTLLDLH
RELIQPALFESLTSTGITSSVITFKPVMLKPKNLYMLEVSASSEEVLQGKTQLFFSTHPV
PEGMVCHVQPSSGFEVHTHFSIFCTSGKEDLVYEYSFSVGNSTKKLLYRGRDYQHYFYLP
SGDPYDDHKVTIYITIGNRFGASTKPCPVNVKVWPSFKRNSVSVSNPDQELFVYGLSNLT
TLIQLKNPQDIINYIFLMTATLNRLSLDPESCVKLQTQTRATLISAICQLDATNQVTFDS
AVLVTKYIQNLSPLRESNILDVLVLKALIRILSYILEAQIPSPRLTLDVLHITTDSVLTY
LLSSREPQFTVNVTFTKLVNAHVADMKLFNCSTRREIKMRHLSTPLIIEFQKREERNKST
GIEFTLSHSEVNTHQFNITAELLKKAVQIRVEFRRPSRCAFPILLLFRMHQRPTPSLYNV
RKVYNWKGQVAQIFLPPSSQKDAGIAYLMLLNADYDKSARNKCIADEVDYTLSVDSTECL
VWDGVKDWRSDGCSVLESFTATKVNCSYTQLSSFTVAHQTIQSIHSVSDITEYISVRANP
MVCIVIVVLVALYAVLLVFCNRADVQVEKNLGIFLLPDNNPSDQFLYAVTINTGLRSRAR
MTAKVHLVLYGEKRVSQTRELSSPDHTLFTRNSRTTFILSSAQSLGQIWQVHVWHDGGGV
SPSWFLNHVTVKDIVDGSSWTFLAQCWLAVDEGDGRVERKLLALDRQLTFREVPYICLLL
HLNLTDCLEDFHPWLSVYSRPSYSTHSHTQRLSVCLLLLQAYMCANSILIYIQEDQCWLE
SGLIGVSLRSVWTGLCGLTLLPLGSLVSFLFRISKVLKACDLESMTCSRLTESSAPQKPT
DSISCIEITQENIPDGNDKLQRDRFKNTQFNLQTSSFPAHPAMVLAARQRARYLRLARPP
TSTELQSVRSQIKKRTHLQKTIRELVLYVFASFIVGFVAYGKSSNDKYLLNQAIRSRFTG
SPSIQKLDDWWNWTANTLPHELYLYSHDHSGLEDNSSHRSEASSRLKKLWTSGWTGSSTR
AVMLQFTLYSPVYNLFTTVTMLGEMTCMGAVLPSVYIYSTRLHHSASALDYCTTAGELLL
LLLTLLQLYFQTYVVSQRGRGYWTDLWNWTEVIVVLLSLLCFICSVHHFTLITDTTEKLQ
RENFKTFVDLTPAASREQRTHSLYGLLMFILLIKCCSLLRLNEAMTTAVSTVIDVFSGLL
WPLITGVIVVFAYSSLGNLITLPKSVSSVIAHGFGIGKLGDLHKNHPSWVLCIYGGLICI
VFFAVKAMIIGVLGSVVKRAKYKRRKHPLSASELCTYIRDVTLALVGKGKQKWTVHTTSN
NFVLEEFEDLVDELLVKLNVISSSDEDQDNYEDQNTLQSACDYSSEVGAENKMEEMEIMP
STCREFLHPHEENSLRSLLEWNTLQRFRRSGETIRDWAFYADQKAHTNISTSPVKKLKDS
QTSLCIKQMTSVHIEGSEMLRANKSQTFKMTREDNECNNTIPNQAFSSQLPLGFISPTDA
LTKHPSRRKSCGQFGLNESYVEKHEIQAEEEAVHIPGQCC
NT seq
6603 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttcagaggcctcgtctgttggacgtcgtcccaactattcagcatgcggctgct
ctggctcttggaaggcctgccaactacaacgatgacctgtctgaggcaccaggaaaggga
gacgttctccctcagcctttgtgctggatggaggtgaacgttgcaagtgtggaagctctg
atcgagtaccttgtgacgcctccgaatgcaatgctgcacactctcaaagacacttcatct
tgttattctgtttggatctatactgaaaaacaagcttatgccacgagagaagatattaaa
ttcctggctatgactgaagatcctcacccactcgagtttgactggcattttggggaccaa
agagcagttagaactccatccaggacattcattacaaaatacctccatccagacaggtac
aacgttacggtcagcatgtccagcagcctgggctgtgctatctctgacgtttatactgta
gtgattcaaagagctgtgcatctcaacagactgctgtacactcgctcggtgttgatgaac
acaacagtaccttttagctgcaggaccaatgctggaacagacatcacttatctctgggat
tttggagatggaacacgaagagttggacaggacactgagcatcatgtgtttaacagtaca
ggggagttcgtagtagaagtgactgtctccaacctagtgagctcggcctctttaaaagga
cacgtgtttgttgttcttgagccatgccaacctccacctgtaaagaacatgggacccagc
aagatccaggtgtggcgttaccaacctgtgtgtattggtgtgacgtatgaagggcagatc
cagtgcaacatctccaaaggtgtccgctacagctggactctctatggaccgactggactg
caactcacaaccacaggcatcaaaacaaaccaacaacatctggagcttccagagtacctc
cttcaatatggaacatatagagctgtagctaaggttcaggttgtaggcagcatagtttac
agcacctactctgttctgctcgaggtgatgcctagcgcacctgtgagcatcatcagcgga
ggcacaaatgtgtttatcaaccgccacaacagcaactcaaacatcactctggatggacgt
aggtcatatgacccagattttcccgataacattatgagttacagttggaaatgcaggccg
gtaaacacggccaagacctcctgtttctccaagcatgttcctgcttcctctgcattgctg
atatttcctgcaagcgcactgaattctaactgtgatctgttcaagttgacgcttactgta
cagagtggaaatcggtcctcttcttccgagatgttcatcaccgtgagatccaaaccgacc
agcaacatcattcatgtatcatgcaaagagtgcagaggaaattcggtcaactggaacgag
aagttgtctgtcacagctgcatgtgaaaactgttctgttaatgttacctactcctggaag
ctgtatttagtaaatgcatctagcaaacgtataccagaggtacgtttctgtggcagtctg
gacataagcttaccttccaaactggaggaggacacacgtttctttcaacagcctgccact
tctgcgtctccatccatcctaaatcaaatagaaacatccagaggcaatgaaattaagatc
acacatgacagtgttgtcagctggcccagacaggggcattcagtggagaaccagaatcca
tcatttttagacctgctgtctgagatagacagtgcatcagactatgaggacttttattct
ggaatagaggaagcagactcaggagtttcactaggccgtccaactggtagacatgcactc
tccttttgacattcacacgcgttaataatagcaatagaaatagagtatgagggtgacaac
ctggtaggacctgtcaaccttggccatgtggtgtctgagaaaaccctgctggatcttcac
agagagctcatccagcctgcactctttgagtctctcacctcaactggaataacctcatct
gttatcacgtttaaacccgtgatgctaaagccgaaaaatctttacatgctggaggtctct
gcaagttctgaggaggttctgcagggaaagacccagctgttcttctccacacaccctgtt
cctgagggaatggtgtgccatgtgcagcctagctcaggttttgaggtccatacacacttc
agcatcttctgcacttcaggaaaagaggatctcgtgtatgaatatagctttagtgtggga
aactcgacaaaaaaactcctctataggggcagggattaccagcactatttttatcttcca
tctggagatccatatgatgatcacaaagtcaccatctacattacaattgggaacagattc
ggagcatctaccaagccatgtcctgtgaatgtcaaagtctggccgagctttaagagaaat
tcagtgtctgtctccaatccagatcaggaactgtttgtgtatgggctgagtaatctaacc
accctgatacagttgaagaacccccaagatattattaattacatatttctcatgactgcc
acattgaaccgcttgagtttggatccagaatcttgtgtgaaactacagacacaaacacga
gccactctcatttcagcaatttgtcagctggatgccacaaaccaggtgacatttgacagt
gcagtactggtgacaaaatatattcaaaatctatccccccttcgcgagtccaacatattg
gatgtgttggtattgaaagctctcatacgcatcctttcttatattctggaagctcagatt
ccttctcccaggttaacacttgatgttcttcacatcactacagactcagtgttgacatat
ctgctgtccagcagagaacctcagttcaccgtgaatgtcacattcacaaaactggtgaat
gcacatgttgctgacatgaaactcttcaactgcagcaccagaagagaaatcaaaatgagg
cacttgtccactccacttataattgagttccagaagcgagaagagagaaataagagcacc
ggtatagagttcacactctcacactctgaagtgaatacacatcagttcaacatcacagct
gagctcctgaagaaggctgtgcagattagagtggagttcagaaggccatcaagatgtgct
ttccccatcctgctgctcttcagaatgcaccaaagaccaacaccttctttgtacaatgta
cgcaaggtctataattggaaaggacaggtggctcagatctttctgccaccttcatctcag
aaagatgctgggattgcatatctgatgctcctcaatgctgactatgataaaagtgctaga
aataaatgcattgcagatgaagtggactacacactgagtgttgattccactgaatgttta
gtttgggatggtgtgaaagactggagatctgatggatgttccgtgctcgagagtttcacc
gcaaccaaagtcaactgcagttacacccagctgtcatcattcactgttgcacatcagaca
atccaaagcattcacagtgtttcagacatcactgagtacataagtgtccgtgccaacccg
atggtgtgtattgtaatagtggtattagtggctctctacgctgtgctgttggtgttttgt
aatcgtgctgatgttcaggtggaaaagaatttggggatattcctcctgccagacaacaat
ccttcagaccagttcctctatgctgttactatcaacacaggcttgagatcaagggccaga
atgacagcaaaggtccatttagttctgtatggtgagaaacgagtatctcagacaagagag
ctgagcagtcctgaccacacactcttcacccgcaattccaggacaacgtttattttgagc
tcagctcagagtctgggccaaatatggcaggtgcatgtgtggcatgatggaggaggtgtt
tctcccagttggttcctgaatcatgtgacggtgaaggatatagtagatggatcaagttgg
acctttctggcgcagtgctggttggcagtagatgaaggagatggacgagtggagcgaaag
ctgcttgctttagaccgacagctcacattcagagaggtgccttacatatgccttctgctg
catctgaatctcactgattgcttagaggacttccacccatggctgtctgtgtacagtcgg
ccatcttacagcacgcattcacacactcagcgcctgagtgtatgtctcctgctgctgcag
gcttacatgtgtgctaactccatactcatatacattcaagaagaccagtgctggttggaa
tcgggcctgatcggtgtttcactacgttcagtgtggacaggactgtgtggacttactctg
ctgcctttaggctctcttgtgtccttcctcttccgtatcagcaaggttttgaaggcatgt
gatttggagtctatgacctgcagcagactgacagaaagctcagcaccgcagaagcccacg
gactccatctcttgcattgaaattacccaagaaaatattcccgatggcaatgacaaatta
cagcgtgaccgtttcaaaaacacccaattcaacctccaaactagctcttttccagcacac
ccagcgatggtgctggcagcccgtcagagagccagatacctgcggctcgcacgtccacct
acttccactgagcttcaaagtgtgaggagccaaattaaaaagaggacacatcttcagaaa
acaatcagagagctggtgttatacgtgtttgcctcatttatagtcggctttgtggcttac
ggaaagtcctctaatgataagtatcttctgaatcaggcaatcagatctcgctttactggg
agtccttcaatccagaagcttgatgactggtggaactggacagcaaacacacttccacat
gagctgtacctttattcccatgatcatagtgggttggaagacaattcctctcacaggtct
gaagcatccagcaggcttaagaaactgtggacttcgggctggactggcagctccacccgt
gccgtaatgctgcaattcactttatacagccctgtttacaacctctttaccacggtcacc
atgcttggagaaatgacgtgcatgggagctgttctaccgtcagtctacatttactctacc
agacttcatcactctgcctctgcccttgattactgcactacagctggagagcttctcctg
ctcctcctcactctgctccaactctactttcaaacatacgtcgtatctcagagaggacgg
gggtactggaccgacttgtggaactggacagaagtgattgtagtcctactcagtcttctg
tgcttcatctgttcggtgcatcacttcacactgatcacggatacaactgaaaaactgcaa
agagaaaatttcaagacgtttgttgacttaactcctgctgcctctcgggaacagcgcact
cattcactttatgggctccttatgttcattcttctgattaaatgttgctccttgctacgc
ctaaatgaagctatgaccacggctgtatctacggtgatagacgtcttctccggtctgctt
tggcctctgataactggtgtgatcgttgtttttgcttactcctccctggggaacctgatc
accttaccaaaatcagtatcttctgttatcgcacatgggttcggcattggaaagcttggt
gatttgcacaaaaatcacccttcttgggtgctttgcatctacggaggcttaatctgcata
gtgttttttgcggtgaaagcaatgataattggcgtactcggttcagttgtgaaaagggca
aaatataaaaggagaaaacatcctctgtctgcatccgagctctgcacttatatccgggat
gtgactctggcgcttgttggcaaaggcaagcagaaatggactgttcataccaccagtaat
aattttgtcctggaagagtttgaggatctcgttgatgagctcctggtcaagctcaacgtc
atttccagtagcgatgaagaccaggacaactatgaggaccagaatacgcttcagtcagca
tgtgactacagctcagaggttggtgctgaaaacaaaatggaggaaatggaaataatgcca
agtacgtgtcgtgaatttttacaccctcatgaggaaaacagtctcaggtcactgcttgaa
tggaacaccctgcagcgctttagacgaagtggggaaacaatccgtgactgggctttttac
gctgatcaaaaggcccatacgaacatctccacatcccctgtaaagaagctaaaggactcc
caaacttctctctgcataaaacaaatgaccagtgttcatattgaaggcagtgagatgcta
agggcaaataaatcacaaacatttaagatgaccagggaggacaatgaatgcaataatact
atcccgaatcaagcttttagctcacaactccctctgggtttcatctctccgactgacgcg
ctcacaaagcatccatctcgcagaaagtcatgtggacagttcggtttaaatgaatcatat
gtagaaaaacatgaaatacaggctgaagaggaagctgtacacattccaggtcagtgctgt
tga
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