Ictalurus punctatus (channel catfish): 108256162
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Entry
108256162 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108256162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108256162
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108256162
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108256162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
Baculo_IE-1
zf-C3HC4_2
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
108256162
NCBI-ProteinID:
XP_017308231
UniProt:
A0A2D0PS32
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All DBs
Position
23:19598193..19599658
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AA seq
406 aa
AA seq
DB search
MSEAFTPRTRGARGAEEILDEIYSDLLECKVCFETFSSEPRARRPRNLPCGHVICLGCVC
ALSHAVSHRLECPFCRKQCDQGGTYECQVLVDLQDMICSYFPKKKPRDREGDLGSGVMRL
HGIFGGWGPLINPTGVAVSRTTQDVLVVHGGHERVSVFGCRGQFLRSFGRYGHDSFQICH
PLDVAVTPGGHVVVTDAGDRSVKVFSLTGSPVATVSDLFQLPWGVDVDLSGNILVTDAEA
GTLWQVVMDFERGVVLVKKLMLEDLKTPRAVACCRASGRVVVVEHLQTGERPKEDATMTR
LKVFSSDFVLLGQLDGFSPHLPGLSVSSITFNRNGELIVADVQQGSVWSLGDVHKAPELI
PLVREGLVRPAGLVATDEDTLIVLDAGDHTVKTYTTDPEDLYGDKT
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaggccttcacgcctcgcaccagaggagccagaggagctgaggagatcctggat
gagatctactccgatctgctcgagtgcaaagtgtgttttgagacgttttcgtccgaaccg
agagctcgaagaccacgcaacctgccctgcggtcacgtgatctgtctggggtgcgtctgt
gccctgtctcacgccgtgtcacaccgtctggagtgccctttctgcaggaagcaatgcgat
caaggtggcacctacgaatgccaggtcctcgttgaccttcaggatatgatctgttcgtat
ttccccaaaaaaaagccccgggatcgggagggagatctggggtcaggggtcatgcgccta
catggcatcttcggaggatggggtccactcatcaacccaactggtgtggctgtgtccaga
acgacacaggatgtcctggtggtacatggagggcacgagagagtgagcgtgttcggttgt
cgtggtcagttcttgcgtagtttcgggcgctacggtcacgacagctttcaaatctgccat
ccgttagatgttgctgttactcccggcggccatgttgtcgtgacggatgcaggagatcgt
tcggtcaaggtgttctcattgacaggaagtcctgtggccaccgtctcagacctgtttcag
ctgccttggggtgttgacgtggacctctcggggaacatcctagtgacggacgcagaagcc
gggacactttggcaggtcgtcatggacttcgaacgtggcgtggttttggtaaagaagctg
atgctggaagatctaaagactccacgagctgtcgcttgctgtagagcgtctggacgcgtc
gtagtggtggaacatctccagactggggaacgtcccaaggaagacgccacgatgacgcgg
ttgaaggtgttcagcagcgatttcgtcctcctcgggcagctggacggtttcagtccgcac
ctgccggggctgagcgtctcgtccataacttttaacagaaacggcgagttaatcgtagct
gatgtgcagcagggaagcgtgtggagtctgggagacgtccacaaagcaccagagttaatt
ccactcgttagagaagggctggtgcgtccggcgggattagtggcgaccgacgaggacacg
ctgatcgtcctggatgccggagatcacaccgtcaagacgtacacgaccgaccccgaggac
ttatacggcgataaaacgtga
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