Ictalurus punctatus (channel catfish): 108256303
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Entry
108256303 CDS
T04658
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 2 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108256303
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108256303
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108256303
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108256303
mRNA cycle factors
Stress granule specific factors
108256303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
DND1_DSRM
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
108256303
NCBI-ProteinID:
XP_017308480
Ensembl:
ENSIPUG00000009105
UniProt:
A0A2D0PST2
LinkDB
All DBs
Position
23:4396315..4497364
Genome browser
AA seq
633 aa
AA seq
DB search
MAQVKVQTSAHAVPSINGTVPTVPPAPPQDNMANPKEKTPMCLVNELARFNRIQPQYKLL
NERGPAHAKIFTVQLCLGEQVWEAEGSSIKKAQHSTANKALAESLLPRPPPRITKPDTHT
NPGSITPTVELNGLAMKRGEPAVYRPLEPKPLHNYRANYNFRGIFNQRYHYPVPKVFYVQ
LTVGSNEFIGEGRTRQAARHNAAMKALQALRNEPIPEKQPQSLEEKKSSEEDSDANKSEI
SLVYEIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAAFSIL
QELKKLPFIPVVEKPKVHYKKRPKTILKISSQAGPEYGQGMNPISRLAQIQQAKREKEPE
YTLLSERGLPRRREFIMQVKVADEVTSGTGSNKKVAKRAAAEAMLLHLGYKASTPIQNTQ
EKPHMDNKSWNGQRATFPEASTNTQKGILHLSPDVYQEMEASRNKAGTVPSVTPMAPVTS
VTFMNPKEVSQAPFYNNSASKTAAIARELLSKTPKTSPTIPCSSVQPSQQLEYLAHIQGF
QVQYTDRQTDNEFVTYLTLSPVQMTFHGIGSSIQASHDQAALSALKQLSEQGLDPVDGGV
KVENGSCEISVKHPDGKQTNSGPQDCADPNAVV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagtgaaagtgcagacctcagcacacgctgtgccctccatcaacggaacggtg
cccacagtcccaccagctcctccccaggataacatggcaaaccctaaagagaaaactcca
atgtgtctggtgaatgagttagcccgtttcaaccggatccagccgcagtacaaactgctg
aacgagcgggggcctgctcacgccaagatcttcactgtacagttatgtttaggtgagcag
gtgtgggaagctgaaggctccagcattaagaaagctcaacactcaacagccaataaagcg
ctggcagagagcttgctgccccgccccccgccacgcatcactaaaccagacacacacacc
aatccaggcagcatcacccccaccgtggagctgaatggattggcgatgaagcgaggagaa
ccggctgtctacaggccgctggaacccaaacccctccataactacagggccaactacaac
ttcagaggaatattcaatcagaggtatcactatccggtccccaaggtgttctacgtgcag
ctgacggtaggcagtaacgagtttattggcgagggtcgaactcgccaagcggctcggcac
aacgcagccatgaaagctttgcaggcgcttaggaatgaacccattccagaaaagcaacct
cagagtctggaggagaaaaaaagttcagaggaggacagcgacgcaaacaaatctgaaatc
agccttgtgtatgagatcgcactgaagaggaacctgcctgtgaactttgaggtgctgaag
gagagcggcccgccccacatgaagagcttcctgacccgcgtgacggtgggcgagttctct
gctgagggtgagggcaacagcaagaagctgtcgaagaagcgtgcggctttctccatcctg
caggagctgaagaagctgcccttcatccctgtagtggagaagcccaaagtgcactataag
aaacggcccaagaccatactgaagatctcctcacaggcagggccggagtatggtcagggc
atgaaccccatcagccgactcgctcagatccagcaagctaaacgagagaaagagcccgaa
tacacgctgctgtccgagagaggcctgccacgccgccgtgaattcatcatgcaggtgaag
gtggctgatgaggtgacctcaggaacagggtcaaataaaaaagtggctaaacgtgcagct
gcagaggcgatgctgctccatctgggatacaaagcctccacgcctattcagaacacacag
gagaagccacatatggacaacaaaagctggaatggacaaagagccactttccctgaagcc
agcactaacacgcagaaaggaatcctccacctctctccggatgtgtatcaggagatggag
gccagcaggaataaagctggcactgtcccctccgtcaccccaatggcccctgtgacctct
gtgacctttatgaaccctaaagaagtgagccaggcgccgttttacaacaacagcgcctca
aagacagccgccatcgcgcgggagctgctgagcaaaacgccaaaaacatctcccacaatc
ccctgcagctccgttcagccatcgcagcagcttgagtacctcgctcacattcagggcttc
caggtgcagtatacggacagacagacggacaatgagtttgtgacgtatctcactctctcg
cccgttcagatgacgttccacggcattgggagctccatacaggccagccatgaccaggcg
gctctgagtgccttgaagcagctttcggaacagggacttgacccggtggacggaggagtc
aaggtggagaatggatcctgtgaaatatcggtgaagcatccagatgggaaacagactaac
tcaggccctcaggactgcgcagatccgaacgctgtcgtgtag
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