Ictalurus punctatus (channel catfish): 108256351
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Entry
108256351 CDS
T04658
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108256351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
108256351
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108256351
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
108256351
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
108256351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
108256351
NCBI-ProteinID:
XP_017308599
Ensembl:
ENSIPUG00000004602
UniProt:
A0A2D0PT46
LinkDB
All DBs
Position
23:complement(1317635..1340316)
Genome browser
AA seq
1624 aa
AA seq
DB search
MFIGCGRKPESPEESRVTTGRAHTNPSDQLHVHSCANKELAGSELGKDRIGFCCIILTRT
EARMTKASQDVYMVKFVERNGHKSELGRKAYEAIVELQSEKYVQIIVEEAALEVERNDKS
LYVFSDFTSDAFEHCRKLGCRIVSPLVVLFCLQQQRCVPKAEQPVYNMAMADVTVSCTSL
DKEARTEVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPVLLPTWVRACW
EKSQDSLFRYSDLCLEEYRCPILKGCTVCVTGLSTVERKEVQRLCELHGGSYTGQLKMNE
CTHLIVSEPSGQKYEFAKKWNVYCISIHWLFDSIEKGFCQDESRYAVEREDKRKEQTGRP
NTSTPTGSNKTDGPSLLGLSHISNISMNVNETTMTTATTIRIETADPIDAFDATICPTDD
LLDGCKLYLCGIVGKRLEKLRRLVNSAGGLHFNQLGEELTHIVMGEPDLDVKGFLTKAIH
RPHIVTVQWLLDSFSHGSLLPVETYFHPSFLPPVPAQVNIPATRPASSRPSRPSFAAPPA
PSPNRHARAEEQLLSQYVDSNQTVVELPPPPDNKNKTCRSEVPDPAAPGHYSTVAGSSEG
GMFTGKRFLLVGFGAESEAQLSMLIVESNGKVLVGRFRGVADYAVVPLLGCEVEATVDEV
VTDTWLAMCVEQQCILPVSSHPLFTPVVVKEGCSPLRDCVLSVSQFTGAERDSLIQLTRH
LGASVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAQKWGLPAVTIRWILESARTGKR
AEEKRYLVDLPPSPEHSEDSFVGASQKAAGPPMPVRISPEIPLLGPQTSTSVTPLDTGRL
QSRAVHSVLRRMKKGEEGEVEGTAPAQEESRGILQKELQLDTPSRFLSRDKLFGPSFNIK
DVFDHLKTPGNKPQQGEGAETPLSEVIERNLKAAVANSNRSHVMSLAALTASPQLGKKPE
PKLHEQVKEKTSAPLDGVVVCVSKKLSKKQSELNAMAASLGADFRWSCDDSVTHYIYQGK
VGDNTKEYRAVKERGLHIVSQHWLQACAEEQKRVPESLYPFTFNPKMSLMLSQVANSTQK
SPPLSTPHSKLRALNDDDDDTWMGAVDITADISTPQREPAEREQQQPSSSERKDLTETLE
MRENLQRQLQEIMSATKLTSGRRASSRLARVGSGGLDSPHTPEILGRMGRRSRTLEALRM
SRQSAVDVNTEASQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLAILPPPPPHTD
QSARDTMTDSELVEMAACDVIQDHTKQMVTPPRVNTEPQAPKIPEAPSTAFPVSKASMPA
ELQFEQEEEREKKVVKKEPPRFQLSSLSPQERIDYSHLVEELGGILLEKQCFDPSCTHII
VGYPLRNEKYLAAMAAGKWILHRSYLEACRAEGHFIPEEDYEWGSHCIMDALPSINSQQK
RLALAALRWRKSLQGHTDKEGAFGGWTVMLNIDQARDAGFRRLLQSGGAKVLPSPSPSLY
KETTHLFADFSRLGPNDVRVDVTEAMAYGVKCLRPEYIADYLMQEPSPPMDAYYLPGAAA
NGIPETSHQGQNPASRKRKASGDTSAVKKSRRLPSPPLKGPYSSELHQKRAYDAFECMQR
RISI
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgtttattggatgtgggaggaaacccgagagcccggaggaaagccgtgtgaccacaggg
agagcacacacaaacccaagcgaccagctgcacgtgcattcctgcgcaaataaagaactc
gccggatccgaattaggaaaggatcggattggattttgttgcatcattttaaccaggact
gaagccaggatgaccaaagcgagccaggatgtgtatatggtgaaatttgtcgaacgtaat
gggcataaaagtgagcttggccgcaaagcttatgaggccatagtggagctgcagtctgag
aaatacgtgcagattattgttgaagaagccgcgctggaggtggagcgcaacgacaagtcc
ctgtacgtgttcagcgatttcaccagcgatgcgtttgagcactgcaggaagctggggtgc
aggatagtgagtcctctggtagtgctgttctgcctgcagcagcagaggtgtgtaccaaag
gcagagcagccagtttacaacatggccatggctgatgttacagtgtcctgcaccagtctg
gacaaagaagcacggacggaagtgatggacttggtccagttgatgggtgggcgggtctac
cgagacctcaacgtgtccgtaactcacctggtggcaggtgaagtgggcagtaaaaagtat
ttggtggcagccagcctggggaagcccgtccttctgccaacctgggtcagagcatgctgg
gagaaatctcaggacagtttgttccggtactcagacctgtgtttggaggagtaccggtgt
cctattctcaaaggttgcactgtgtgtgtgacgggtctgtccacggtggagcgcaaagag
gtgcagaggctgtgtgaactgcacggtgggagttacaccggccagctcaagatgaacgaa
tgcactcacctcattgtcagcgagccctcaggtcagaagtatgagttcgcgaagaagtgg
aacgtgtactgcatctccattcactggcttttcgacagtatcgagaagggcttctgtcag
gatgagagtcgttatgctgtagagcgagaggacaagaggaaggagcagactggcagaccc
aacacctccactccaactggctcaaataagacagacggaccgtctttgcttggcctgagc
catatctcaaatatcagcatgaatgtcaacgaaacaaccatgacaactgcaacaacgatc
cgcatagagactgccgatccaattgacgcatttgatgctaccatctgtccaacagatgac
ttattagatggctgcaagctttacctgtgtggcatagtggggaagaggctggagaaactg
cgccggttggtgaactctgccggaggcctgcacttcaaccagctcggtgaagaacttaca
cacattgtgatgggagaacctgacctggatgtcaaaggctttctcactaaagccattcat
aggccacatattgtcacagtgcagtggttgctggacagtttctctcatggctctctgctt
cctgtggagacctacttccacccttcattcctccctcctgttccagcccaagtgaacatt
cccgccacccgccctgcttcctcacgcccctccaggccatcttttgccgccccgccagca
cccagccctaaccgacatgccagggctgaggaacaattactctcgcagtatgtggacagt
aaccagactgtagtggagttacctccacccccagataacaaaaacaagacttgcaggtct
gaagtaccagacccagctgcaccaggtcattactccactgtagctggatcctcagaggga
ggtatgtttactgggaaacgcttcctcctggtgggctttggtgcagaatcagaggcacag
ctctcgatgttgattgtggagagcaatggaaaagttttggttggccggttcagaggtgtg
gctgattatgccgtagttcctcttctgggctgtgaggtggaggccacagtggacgaagtg
gtcacagacacctggctggcaatgtgtgtggagcagcagtgtattctgccagtgtcatct
catccattgttcaccccagttgtggtgaaggagggctgctctcctctcagagactgtgtg
ctgtcagttagccagtttaccggagcagagcgagattccctcattcagcttacaaggcat
ctgggagcaagtgtccaggactattttgtgcgcactgctaatcagaggaaaggcatgctg
gccagcactcaccttgtcctgcagactcctgagggcacgaagtaccaggcagcacagaag
tgggggctgcctgccgtgaccatacgctggatcctagagtctgccagaacaggcaaacgt
gctgaggagaagcgctatctggtggatctgcctccatctcctgagcacagcgaggacagt
tttgttggagcgtctcagaaagctgcaggccctcccatgcctgtgcgtatctctccagag
attcctctgctgggtcctcagaccagcacctccgtaacgccgttggacacgggccgtctg
cagagccgcgctgtccactccgtcctccgcaggatgaagaaaggtgaggagggagaggtg
gagggcacagccccggctcaagaagaaagcagagggatcttgcagaaagagcttcagctt
gacacgccgtctcgcttcctcagcagagacaagctttttggaccttcctttaacattaag
gatgtgtttgaccatttaaaaacacccggtaataagcctcagcagggcgagggggcggag
actcccctaagtgaggtgatcgaaaggaatttgaaggcagcggtggccaatagcaaccgc
agtcatgtcatgagcctcgccgccttgactgcaagtcctcaactaggcaaaaagccagaa
cctaaactccatgagcaggtgaaggaaaagacttcagctccgcttgacggagtggttgtt
tgtgtgagtaagaaactcagtaaaaaacagagtgagctaaatgcaatggctgcatcccta
ggagcagacttcaggtggtcttgtgatgattcggtcacccactatatctaccagggcaaa
gtgggagacaacactaaagagtacagggcagtgaaggaaagagggctgcatatagtgtcc
cagcactggctgcaggcgtgtgcagaggagcagaagcgagtgcctgagtcactctacccc
ttcacctttaaccccaaaatgagcctgatgctgagccaggtggcaaacagcacccagaaa
tctcctcccctctccacacctcactccaaactccgagctctcaatgatgacgatgacgac
acgtggatgggggctgtggacatcactgcagatatttctacgcctcagagagaacctgca
gagcgagagcagcagcaaccgagcagcagtgaaaggaaagacttgaccgagactctggag
atgagggagaacttgcagaggcagctacaggagattatgtctgccacaaagctgaccagt
ggccggcgagcctcctctagattggctcgagtgggttcagggggtctagactctccacac
actccagagattctgggccgaatgggtagacgcagcaggacactggaggccttacgcatg
tcccgccagtctgcagtggatgtgaacacagaagcgtctcagagtgagcagatagtgtgg
gacgaccccacggcgagagaggagagggcaaaactggctgataacctgcaatggccgggc
agcccttctcaacattccgagcctctcgccatccttcctcctccaccaccacacactgat
caaagcgcccgagacaccatgactgactctgaactggtggagatggctgcctgcgatgta
atacaggaccacacgaaacagatggtgaccccaccaagagttaacactgagcctcaggct
cccaaaatacctgaagcacctagtactgcttttcctgtctccaaagcttcaatgccagct
gagctacagtttgagcaagaggaggagcgggagaagaaggtggtgaagaaggagcctcca
cgcttccagttgtcttcacttagcccacaggagcgcattgattacagccatctcgtagag
gagctgggtggtatcttactagaaaagcagtgttttgaccctagctgtactcacatcatt
gtgggttatcctctgaggaatgagaaatacctggctgccatggcggctggcaaatggatc
cttcaccgctcatacctggaggcctgtcgcgctgagggacacttcataccagaggaggat
tatgaatggggtagccactgtattatggatgctcttccctccataaactctcaacagaag
agactggcactagcggccttgcgctggagaaaatcgttgcagggtcacaccgataaagag
ggtgcatttggtggctggacagtgatgttgaacattgaccaggccagagatgcaggattc
agaagattgctgcagtctggaggagcaaaggtattgccaagcccatctccctctctgtat
aaggaaaccactcatctcttcgcagacttcagccggctgggtcctaatgatgtgagagta
gatgtgactgaggccatggcttatggagttaaatgcctcaggcctgagtacattgctgat
tacctcatgcaggaaccctcaccaccaatggatgcatattatcttcctggtgcagcggcg
aatggtattcctgagacctcacaccaaggccagaaccccgcctcacgcaagcgcaaggcc
tcaggggacacatccgctgtgaagaagagcagacgtttaccaagtccaccactgaagggc
ccttattcatcagagttgcatcagaaacgagcatatgatgcatttgaatgcatgcaaagg
cgaatttccatctga
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integrated database retrieval system
