Ictalurus punctatus (channel catfish): 108256488
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Entry
108256488 CDS
T04658
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108256488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108256488
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108256488
mRNA degradation factors
3'-5' decay
Pan complex
108256488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
108256488
NCBI-ProteinID:
XP_017308901
Ensembl:
ENSIPUG00000009790
UniProt:
A0A2D0PU00
LinkDB
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Position
23:complement(4778491..4803128)
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AA seq
804 aa
AA seq
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MNSGLPVSAAPLGGVGIPGVKVKFCRYYAKDKTCFYGDDCQFLHEDPSAGSVVHGGGSGG
SPVTLALAGGAVSSAAAAVAGYTLSGNAVAPCPSGAPAGVAKKSDALGPAGAALDGQLLS
IAGMDGGALSDANLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTSSSSSPSLLNDGAKNF
SHSAHDPVSSPTSSLFSDFGALSITQRRKAPNPAATEFIPKGAPRMSTMSQAAVPTFPSP
LFPHPALSGSAAAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPNPANYMVPTT
VSEQGGAAHIIQKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPQTAPHVAYMQPKANAPS
FFMADELRQELINRHLITMAQIDQSENSGVPSEVDSYHSLFPLEPLLPPNRLQKTSNFSY
ITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNAVTLREVFTTKAFGD
HSLVFSYDFHAGAETMYSRHFNDPTADSYFTKRKWGPHEPPPPRQHAGLLPESLIWAYIV
QLSSALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMPQYQ
QADLISLGKVVLALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVN
DIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWS
ETGDRYLLKLFRDHLFHQVTEAGTPWVDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVV
TYSDLKRCFDSTFQELLAAANGSL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtggactcccggtctcggctgctccgctcggcggtgtcggaataccgggcgtc
aaggtgaaattctgtcgttattacgcgaaagacaagacttgcttttatggcgacgattgc
cagttcttgcatgaggatccgtccgcggggagtgttgtgcacggcggaggaagcggcggc
agtccggtgactttagccctcgccggcggggcagtgagctctgcggcggcggctgtagca
gggtatacgctctctgggaacgcagtagcgccgtgtcctagcggagctccggcgggtgtg
gccaaaaagagtgatgctctcgggcctgcaggagcggctctggacggccagttattgagc
atcgctggtatggatggcggagcgctcagtgatgcaaacctgaccaactcctatttcagc
agcagttttattggagtcaatggctttggaagtccagcagagtccaaatactcaatgatg
cagaggatgaccagcagcagcagctccccgagtctccttaacgacggtgccaagaatttc
agccacagcgctcatgatcctgtaagttcccccacttcctccctgtttagcgactttggt
gctttgagcataacgcagaggaggaaggctcctaaccccgctgccacagagttcatccct
aaaggagcaccacgcatgtccactatgtcccaggcggccgtaccgacatttccctcgcca
ctattcccccatcccgctctgagcggctcagccgcagcaggactcgcacctggtatgtct
ttgtctgctgggtcgtctcctctccactcgcccaaaatcactccccacacctcacccgcc
ccccggcgccgtagccacacccctaaccccaacccagccaattacatggtgcccaccacg
gtgtcggagcaaggaggcgccgcccacatcattcagaaggagaccgttggaggaaccacc
tacttttacaccgacaacacccctgctcccatggctggaatggtgtttccaacgtaccat
atctacccacaaacagcacctcatgtggcgtacatgcagcccaaagccaacgctccgtcc
ttctttatggctgacgagctcagacaggagttgattaaccggcatttgataacgatggcc
caaatcgatcagtctgagaactcgggagtcccatctgaggtggacagctaccatagcctc
tttcccctagagcctcttctgcccccaaaccgcctccagaaaaccagcaacttcagttac
atcacttcctgttacaaggcggtcaacagcaaagatgacctgccgtactgtctcaggagg
atacatggcttcaggctggtgaacaccaagtgcatgatgctggtcgacatgtggaagaag
atccagcactccaatgctgtcacgctgcgggaagtctttaccaccaaagcttttggagat
cactcgttggtgttctcttacgacttccatgccggtgctgagaccatgtacagcaggcac
ttcaacgacccgacggctgactcttatttcaccaagaggaagtggggtccgcatgagccg
cctcctcctcggcaacatgccggtctgctgcccgagtctctgatctgggcctacatcgtg
cagctgagctcagccctacgtaccatccacactgcaggcctggcctgtagggttatggac
cccagcaagatcctcatcactggaaagactcggttacgggtgaactgtgtaggtgtgttt
gatgtcttaacatttgacaatagtcagaccaaccacttggccctcatgccccagtaccag
caagcagatctgatctctctggggaaggtggtgttggcactggcctgcaactctctggct
ggcattcagagagagaacctgcagaaagccatggagcttgtgtccatcaactactcatcc
gacctcaagaacctcatcctgtacctgcttacggagcaaagtcgcctgcgtagcgtcaat
gacatcatgcccatgatcggagccaggttttacactcaactggatgcttcacagatgagg
aatgacgtcattgaggaagatctggccaaggaggtgcagaacggacgcttgttccgtctt
ctggccaaactgggaaccatcaacgagagaccagaattccaaaaggatccgacgtggtcc
gaaacaggggatcgctacctgctgaagctcttcagagatcacctgttccaccaggtgact
gaagcgggcacgccctgggtcgacctgagccacatcgtgtcttgtcttaataaactggat
gccggagtgcccgagaagatcagcctggtgtctcgggatgagaagagcgtgctggtggtg
acctactcagacctaaagcgctgctttgacagcaccttccaggaactgctggctgccgct
aacggctcgctgtag
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