Ictalurus punctatus (channel catfish): 108256503
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Entry
108256503 CDS
T04658
Symbol
si:dkey-37o8.1
Name
(RefSeq) elongation factor 1-alpha-like
KO
K03231
elongation factor 1-alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108256503 (si:dkey-37o8.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108256503 (si:dkey-37o8.1)
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108256503 (si:dkey-37o8.1)
03012 Translation factors [BR:
ipu03012
]
108256503 (si:dkey-37o8.1)
04131 Membrane trafficking [BR:
ipu04131
]
108256503 (si:dkey-37o8.1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108256503 (si:dkey-37o8.1)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108256503 (si:dkey-37o8.1)
Transfer RNA biogenesis [BR:
ipu03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
108256503 (si:dkey-37o8.1)
Translation factors [BR:
ipu03012
]
Eukaryotic type
Elongation factors
108256503 (si:dkey-37o8.1)
Membrane trafficking [BR:
ipu04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
108256503 (si:dkey-37o8.1)
Exosome [BR:
ipu04147
]
Exosomal proteins
Proteins found in most exosomes
108256503 (si:dkey-37o8.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
WH_Rok
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
108256503
NCBI-ProteinID:
XP_017308925
Ensembl:
ENSIPUG00000004067
UniProt:
A0A2D0PUZ2
LinkDB
All DBs
Position
23:complement(779260..781908)
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AA seq
458 aa
AA seq
DB search
MGREKIHINLVIIGHVDSGKSTTTGHLVYKCGGVDPRTLDKYEKAAAQMGKGSFKYAWVL
DKLKAERERGITIDISLLKFNTQKYVFTIIDAPGHRDFIKNMITGTSQADAALLVVSAAK
GEFEAGVSRNGQTREHVLLAYTLGVKQLVVCVNKMDLTEPPFSQKRYEEVVKNVTVFIKK
IGYDPTAVPFVPLSGWCGDNMLAPSQKMSWFKGWKIKRKDGFSSGKTLLEVLDSLYPPVR
TASKPLRLPLQDVYKIGGVGTVPVGKIETGILKPGMVLTFSPAKLTAEVKSIEMHHQGLQ
TALPGHNVGFNIKNVAVKNLRRGDVAGNAQQDPPSDVNSFIAQVIILNHPGKIKSGYSPV
LDCHTTHVTCSFAELQEKLDRRTGKKLEDIPPFLVSGDAATVKFVPIKPLCVESFFSYPP
LGRFAARDLKQTVAVGVIKSVEKVDQARRTAQKAQALK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggggagagagaagatacacatcaaccttgtgatcattggccatgttgacagtgggaaa
tcgaccactacgggccatcttgtttataaatgcggtggtgttgacccaagaaccctggat
aagtatgagaaagctgcagctcagatggggaaaggttccttcaagtatgcatgggttctt
gacaagctgaaggcagaaagagagcgtggcatcaccattgatatttccttgttgaagttc
aacactcagaagtatgtgttcactataattgatgcacctggtcaccgggacttcattaag
aacatgattacaggaacttcacaggctgatgctgctctgctggttgtctctgcagcaaag
ggtgagtttgaggcaggcgtatcccgcaatgggcagacaagggagcatgtcttgctggct
tacactctcggagtcaagcagcttgtagtctgtgtcaacaaaatggacctcactgagcca
cctttcagccagaaacgttatgaggaggtagtgaaaaacgtaactgtttttatcaagaag
attggttatgacccaactgcagtgccctttgtacccttatctggttggtgcggtgacaac
atgcttgcaccttcacagaagatgtcttggtttaaaggctggaagatcaagagaaaggat
ggcttttcaagtggcaagacactgttagaagtgcttgactcattgtacccaccagtgcgc
actgccagcaagcctcttcgtctaccactgcaggatgtctacaaaattggaggagttggc
acagttcctgtgggcaaaattgaaactgggattctgaagcctgggatggttctgaccttc
tcaccagctaagctgactgcagaggttaaatccattgagatgcatcaccaggggctgcag
acggccctgcctggccataatgtgggcttcaacatcaagaatgtggcagtcaagaacttg
agacgtggagatgttgctggtaatgcccagcaagacccaccatctgatgtcaatagcttt
attgctcaggttattattctcaatcaccctggcaaaatcaaaagtggttactctccagtg
ctggactgccataccacccatgtgacctgtagctttgcagagctgcaggagaagcttgat
cggcgcacagggaagaaactggaagacattcctcctttcttggtctctggggatgctgcc
acagtcaaatttgttcccatcaaacccctgtgtgtggagagcttcttcagctatccacct
ttagggcggtttgcagcaagggacctgaagcagactgttgctgttggggtgatcaagtca
gtggagaaggtggatcaagcaagaaggactgcacaaaaagctcaagcattaaaatga
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