Ictalurus punctatus (channel catfish): 108256577
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Entry
108256577 CDS
T04658
Symbol
spata13
Name
(RefSeq) uncharacterized protein spata13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108256577 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108256577 (spata13)
Membrane trafficking [BR:
ipu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108256577 (spata13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_2
SH3_1
SH3_9
PH
DUF3104
Motif
Other DBs
NCBI-GeneID:
108256577
NCBI-ProteinID:
XP_017309096
Ensembl:
ENSIPUG00000009682
UniProt:
A0A2D0PUJ0
LinkDB
All DBs
Position
23:4688800..4712105
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AA seq
1270 aa
AA seq
DB search
MRKTGHADGASTQGRMPLAYPSNGTSLAHHPEAPVRLIRSSFEAEKRTNPGAPMRPVRSE
ACCEKRGLNGVNTHPWSTPVIVDAQDRSCSSKNVRIFSFQRKRGAAGSEQTPLRGPAGAS
QAWPGLHFMGSFKKLRSSVLQGIQNRGGVTGDSQEKDLYFTNEESNGFLVTKRNFGSSQT
NRNEMSAVSNGGSVTTPSTCVSDEEDDDEEDGYGLQRNSHFSRSIRRAYGAGRISLLDNV
RKQSEGPTAQEPAARTRPCSTVEPIGLNVIFDTDDNVKASSRLSKSADNLHIFKSPFKHK
LPSIQPQSLEDSSTPNFQRTASASSADVQECVSGRRRGAVGVRGKMHKLVGSLTDLSVNR
KPNPGPTTTAPLSALSQLHDDYTRRTPCVPASERQRRPPPSYTCPSDKQKVQADVHSHTP
AIHADSLVPNTVNSLNHQVPECTNSTEQDPESSPTLCSDSSITPLTPVTGNSATVEEEQN
VKADVIQDKHCTSPGQEQGLDNVKVNLECIWKTPERQSENLETPSGDPSFTDLLKRNDEG
CSDSVFISPPVTPTSAAEWPLVTTPSSPASSCDTPDSSVPRRRAARNKPRPISDYGQLMC
RKYAVPMEEVELQDDAQEGCNANESHAADFHIQENSCLNGHTESRRRRPTSVIGGVDLFA
SPDEKEDAGLPSPVTRPPVPSHGVPPYRAISARLRPCVFSQSTPTGLDRVGRRKPHRVLS
DGCTGLDDSVSEEDGSFDELTEGTPYLQPEVDLSTLNQYISSGHAVYAEALWDHVTMGEQ
ELAFKAGDVIRVLDAQEKDWWWGLVGERQAWFPSSFVRVRVNQEDSAADSVENSPEQREA
LSKEPHSQTTEHRDQMRANVVQEIMNTERVYIKHLRDICEGYIRQCRKHPGMFTDAQLKT
IFSNIEEIYKFQRKFLKDLEKNYDKENPHLSEIGSCFLQQGEGFSIYSEYCNTHPAACAE
LQRLMKQGRYKHFFEACRLLQQMIDISIAGFLLTPVQKICKYPLQLGELLKYTPKDHSDY
EGVCKAHEAMKNVASLINERKRRLESIDTIAHWQEAILHWEGEDVLSRSSELIHSGELTR
VVRAGKTQQRSCFLFDHQLVFCKKDVLRRDLLHYRGRLDTDSVVPKDLTDGRHPDLGTLR
NAIALRNHDTLEVLCVLSCRKAQDKQLWLEAFVRERRRVKEDQEMGMEISETQRKQAIQN
ARKSKQGKIKNIKYAGHPVSHHHQPLHPIHQRHITVPTSIPQQQVFSLAEPKRKPAHLWY
TFTRNALFRK
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagacaggccacgcagatggagcttcaactcagggcaggatgcctctggcttac
ccatcaaatggtacctctcttgctcatcaccccgaggctccagtgaggcttatccgcagc
tcctttgaggcagagaagcggacgaatccaggtgccccaatgaggccagtccgctctgag
gcttgctgtgagaaacgtggactcaatggtgtaaacacacatccatggtccacccctgtg
atcgttgatgcgcaagatcgatcatgctcctccaagaatgtgcgtatcttttccttccag
cgaaagcgtggtgcggcaggctctgagcagacaccgcttcgaggcccagccggtgcttcg
caggcatggccaggtctccatttcatgggttccttcaaaaagctgcgctcctccgttctc
cagggcatccagaacaggggcggtgtgacaggagacagtcaggagaaagacttgtacttc
accaatgaggagagcaacggtttcttagtaaccaaaagaaattttggaagtagccaaacc
aacaggaatgagatgtcagcggtgagcaacggagggtctgtaaccacaccaagtacatgt
gtttcagatgaagaggatgatgacgaggaagatgggtatggcctacagaggaactcgcat
ttctcaaggagtatacgtcgagcttatggagcaggacgcatctcccttttggacaatgta
cgaaagcaatccgaaggtcctaccgctcaagaacccgctgctcgcactcgaccctgcagc
accgtggaacccattgggctcaatgtcatttttgatactgatgacaatgtgaaggcctcg
agtagactaagcaaaagtgctgacaatctgcacatattcaagagccctttcaaacacaaa
ttaccctcgattcagccccagagcctggaagattccagcaccccaaatttccagagaaca
gctagcgcttcatctgcggatgtgcaggaatgcgtatcagggcgacgtagaggagccgta
ggagtgcggggaaagatgcacaaactcgtcggaagtttaacagatctgtctgtcaaccgc
aagccgaaccctggccccaccaccacagcccccttatcagccctcagccagctccatgac
gactacacccgcaggactccctgtgttcctgctagcgagcgtcaacgcagacccccaccc
tcctatacctgtccgtctgacaagcagaaagtacaggctgatgttcatagccacacccca
gctatacatgccgactccttagtacccaataccgttaattccttgaatcatcaggttcct
gagtgtaccaactccacagaacaggatccagagagctcaccaactttgtgttcagatagc
tctatcacccccctcacgcctgtcacaggaaatagtgcgactgtggaagaagagcaaaat
gtgaaagctgacgtcattcaggacaagcactgcaccagtccaggacaggaacaaggactg
gacaacgttaaagtaaacttggagtgcatctggaagactccggagagacagagtgaaaat
ctagagacaccatccggagacccgtctttcacagacctcctgaaacgaaacgatgaagga
tgcagcgactcagtgttcattagtcctcctgtcacaccaaccagcgctgcagagtggccc
ctggtgacaacaccaagctcgccagcctcctcctgcgacacgcctgactcttctgtgccc
aggaggagggcggccagaaacaaacctcgaccaatctcagactacggacagctcatgtgc
agaaaatatgctgtccccatggaggaagtggaactccaggatgatgctcaggaggggtgt
aatgctaacgagtcacacgctgctgattttcacattcaagagaacagctgtctgaatgga
cacacggaaagcaggaggaggcgaccgacctcagtgataggaggagtggatctgtttgca
tctcctgacgagaaggaagatgccggtttgccttctcccgtcactcgaccccctgtaccc
tctcacggtgtgcctccgtaccgcgccatatctgcccgcctgcgcccctgcgtcttctcc
cagagcacaccgacgggcctggaccgagtgggtcgccgcaaaccgcaccgagtcctcagt
gacggatgcacagggctggatgacagcgtgagcgaggaggacggcagttttgatgagctc
acagagggaacaccgtatctgcagccagaggtcgatctgtcaactttaaaccagtacatc
tcgtcaggacatgccgtttacgccgaggccctgtgggaccacgtgacgatgggcgagcag
gagctggccttcaaagccggggacgtcatccgggtgctggatgcccaagagaaagactgg
tggtgggggctggtgggcgagcgtcaggcctggttcccctccagctttgtgagagtgcgt
gtgaatcaggaggactcggccgctgacagtgtggagaactctccagaacagcgagaggct
ctatctaaagaaccacacagccagaccactgaacaccgagaccagatgagggctaatgtg
gtccaggagatcatgaacactgagcgcgtctacatcaaacacctccgagatatctgtgag
ggttacatccgccagtgcaggaaacacccgggcatgttcacggacgcccagctcaagacc
atcttcagcaacatcgaagagatctacaagttccaaaggaagtttctgaaggatctagaa
aaaaattacgacaaagaaaacccccatctgagtgagatcgggtcgtgcttccttcaacag
ggtgaaggtttctccatatactcggagtactgtaacacacacccggcggcgtgtgcagag
ctgcagcgactgatgaagcagggacgctataagcacttcttcgaggcctgtcgcctcctg
cagcagatgattgacatctccatcgctggcttcctgctcacgcccgtgcagaagatctgc
aaatacccgcttcagctgggcgagctgctcaaatacacacctaaagaccacagtgactac
gaaggcgtgtgtaaagcccatgaggcgatgaagaacgtggccagtctgatcaacgagagg
aagaggaggctggagagcatcgacaccatcgcgcactggcaggaggccatcctgcactgg
gagggcgaagacgtgttatcacggagctctgagcttatccattcaggcgagctgacgcga
gtggtccgtgccgggaagacgcagcaacgtagctgcttcctgttcgatcaccagctggtc
ttctgtaaaaaggacgtcctacgacgggacctactgcactaccgcggacgccttgacacg
gacagcgtagtgcccaaggacctgactgacgggcgtcacccggacctgggcacgctgcgg
aacgccatcgccctgcgcaaccacgacacgctggaggtgctgtgtgtgctgagctgcaga
aaagcccaggacaagcagctgtggctggaggctttcgttcgagaacgcagacgtgtgaaa
gaggaccaggagatgggtatggagattagcgaaacccaaaggaagcaggcgattcaaaat
gcccgaaaatcaaagcaaggcaaaattaaaaatataaaatatgcaggtcacccagtgtct
catcatcaccaacccttacaccctatccaccagcgccacatcactgtaccgaccagtatc
ccccagcagcaggtcttctctttagcagaacccaagaggaagcccgcacatctgtggtac
acgttcacgcgcaacgcccttttccggaaatga
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