Ictalurus punctatus (channel catfish): 108256603
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Entry
108256603 CDS
T04658
Name
(RefSeq) cohesin subunit SA-3 isoform X1
KO
K13055
cohesin complex subunit SA-3
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09143 Cell growth and death
04114 Oocyte meiosis
108256603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108256603
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Meiosis-specific proteins
Cohesin complex and associated proteins
108256603
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HEAT_SCC3-SA
SCD
STAG
Cnd1
Cas10-Cmr2_palm2
AdoHcyase_NAD
DHR-2_Lobe_C
Motif
Other DBs
NCBI-GeneID:
108256603
NCBI-ProteinID:
XP_017309144
Ensembl:
ENSIPUG00000000431
UniProt:
A0A2D0PSZ0
LinkDB
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Position
2:13994422..14030701
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AA seq
1179 aa
AA seq
DB search
MVLAESDLDSLSPEEPDDVLGSDEDFEPNMKNTKRKQGPVPGATLSKRRRLRAGSSTSSP
SLTHTPGASRTPKNSLGPQPEMARTERRKRGSMFEAVRSGRSALVTVVDDWLDDYKQDRE
EGLLELLNFVIECCGCKGIVTREMFDIMQNADIISHLTKEFNEDSVGYPLAAGGSQGRRF
REGLCEFVFQLVQRCRNSLLYDEFVFSALIAFLTGLADSQVRAFRHTSTLIAMRLMSAIV
AVSAVVYAQADATQRRYQLEKSKSAAHRATERLEELQNSYNQLLEQQEELGSLMNGIFKG
VFVHRYRDKVPEIRAVCMEEMGVWLRENPTSFLNDGHLKYLGWMLHDKQASVRLQCVLSL
QKLYEEKSFIGRLELFTSRFKERLLNMVLDKDADVAVEAVRLLLIIMQKTEDGLSEDECM
RVYPLVFAAHRGLASAAGEFLYHVLCTEVDRLLEEDEKERRNVTFLNLLTCFFIQSKYHE
HAAYLVDSLWGVAVSELKDWETMTSLLLQENGEEQGLNDDEEAALIELMMCAVKQATEGS
PATARALGKKNLKGRKQQTQERKRITNHFIPLLPQLLTKFSADVDKVVCLLRVPLHFELE
AYGSTGRLEKYLELLLSQVCEIVEKHHEESVLEACVRALCVLCCDQYTFSARAERIVSQL
LDSTLEKFNTHLTDVLQGTADEDDVYSAVTSLKRLAIFSSARDLTVLKLFEPCFLLLKTG
LESKEVDKELMSCALKCAAFHLLWVRVKISQTPQPEKAEVKNLLKQVRSFCVVCQSCLSL
SSSLIRNQAFECVCDVLVVFGQGKGRDFDAQNVCVSPDDTLRAELASFLIDYIFSEPEDE
DTGVDEEEELKITALQRKRNQLAGYCKLIIYGVLELRAAADVFKHYSKFYRDFGDIIKET
LSKCKMMSPVESARTICLSLQQLYSSLVDEGHDEEMRDIRDVAKKLTMSFGINLQHIRKP
LIALHQDGIRFALREADETDHPNLSFLEILSEFSYKLIKQDRAQLLDYLHGVCESVGVSV
NSVGVSMYERSLRSGSRETPAVSPPHTPAKRRKTTRRSVSSGLDTPALTSTVIQSRVAPT
HQQSRPPPTEFSSDQPSEDDFIEGSVQRKAMNSRREQESSEHSGVSSQLHMLSLIEENFE
EEDEPDIEDYYDDEDSDGVGAVSLPSTRHSTSFLEDLFE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggtgctggcagagtctgacctggacagtttgagtcctgaggagccagatgatgtttta
ggatcagacgaagactttgaacccaatatgaaaaacacaaagagaaaacagggaccagtt
ccaggcgcaacactttctaaaaggcgtagactgagagcaggcagcagcacctccagtcct
tcactcacacacacacccggagcttctcgcacaccaaaaaactcactcggcccacagcct
gagatggcccgaacagaaaggaggaagagagggagcatgtttgaggctgtgagatccgga
cgctccgcactggtgacggtggttgatgattggctggatgactataaacaggatcgggag
gagggtcttctagagctccttaattttgttattgagtgctgtggctgtaaaggaattgta
acaagggagatgtttgacattatgcagaatgctgacatcataagtcacctgaccaaagag
tttaatgaggactcagtaggttaccccctggcagcaggggggtctcagggccgacggttt
cgtgaaggactgtgtgagtttgtgtttcagctggtgcagcgctgcagaaacagtctcctt
tatgatgagtttgtgttctcagcactgatcgccttcctcacggggctcgctgattcgcag
gtccgagccttcagacacactagcacgctcattgccatgcgtctgatgtctgcaatagtg
gcagtgtctgcagtcgtgtatgctcaggctgacgcaacacaaagacgatatcagctggag
aaaagcaagagtgccgcacacagagcaactgagagactggaagagctccagaactcctac
aatcagttgttggagcagcaggaggagttgggctctctgatgaacgggatctttaaagga
gtgtttgttcatcggtatagagacaaagttccagagatccgtgcagtctgtatggaggag
atgggggtgtggcttagagaaaaccccacctccttccttaatgatggacacctcaaatac
ctaggctggatgttgcatgacaagcaagctagtgttcgcctgcagtgtgtgttgtccctt
cagaaactgtatgaggaaaaaagtttcatcggccgcctggagctctttacaagccgtttt
aaggagaggttgttgaacatggtgctggataaagacgctgatgttgctgtggaggcagtc
agactgctgctgatcattatgcagaagacagaggacggtctgtctgaggatgagtgtatg
cgtgtgtatccactagtgtttgctgcacatagaggactcgcttctgcagctggagagttt
ttgtaccatgtgctgtgtaccgaggtggatcgtctactagaagaagatgagaaagagagg
cgcaatgtcactttcctcaacctgctcacatgcttctttattcaaagcaagtatcatgaa
catgctgcctacctggtggacagcctctggggtgtggcagtgtcagaacttaaagattgg
gagacaatgacatcactgttgcttcaggagaatggggaggagcaagggctgaatgatgat
gaagaggctgctctaattgagctgatgatgtgcgcagtcaaacaggcaacagagggaagt
ccagctacagctcgggcccttgggaagaagaatttgaaaggcagaaagcagcaaactcag
gagaggaaacgcatcaccaatcacttcataccactgctgcctcaactactcactaagttc
tctgcagatgtggataaagtggtgtgtttgctcagagtgcccctgcattttgagctcgag
gcttacggcagcacgggccgtctggagaagtatttggagctgttgttatctcaggtgtgt
gagattgtggagaagcatcacgaggagagcgtgctggaggcctgtgtgcgtgcattgtgt
gtgttgtgctgcgatcagtacactttctctgcgcgcgccgaaagaatcgtcagtcagcta
cttgactcgacgctggagaaattcaacacacacctcactgatgtactgcagggcacagct
gacgaggatgatgtgtacagtgctgtgacttccctgaagaggttggccattttcagcagt
gcaagagatctgactgtgctgaagctatttgagccatgcttcctgctgttgaaaactgga
ttggagtccaaagaggtggacaaggagttgatgtcatgtgcactgaagtgcgctgctttc
catctgctgtgggtgagagtgaagatctcacagacacctcaacctgagaaggctgaggtg
aaaaatttgttgaagcaagttcgttcattttgtgtggtgtgccagagctgtctttctctg
agcagcagtcttataaggaaccaggcctttgaatgtgtgtgtgatgtgttggtggtgttt
ggacagggcaaaggcagagattttgatgcacagaatgtgtgtgtttctcctgatgacaca
ctcagggctgagttggcctcctttctaatcgattacatattctctgagcctgaggatgag
gacacaggtgtggatgaggaagaggagctgaaaattactgctctccagcgcaaaaggaat
cagctggcaggttactgcaaactgatcatttacggagtgttggaactcagagcagcagct
gatgtcttcaagcactacagcaagttctacagagattttggtgatataattaaggagact
ctgagtaagtgtaagatgatgagcccagtggagagcgcaaggacgatctgcctcagcctg
cagcagctctattcttcattagttgatgagggtcatgatgaagagatgagggacatcaga
gatgtggctaagaaactgaccatgagctttggcattaatctacagcacatccggaaacca
ctcatcgccctgcaccaggatggtatccgttttgcgctgagagaagctgatgaaactgat
catcctaacctaagctttctggagatcctcagtgaattcagctacaaactcattaagcag
gacagggcacagctattggattatctgcacggtgtgtgtgaaagtgtgggtgtgagtgta
aacagtgtgggtgtgagcatgtatgagcgctcgctgcgttctggatccagagagactcct
gctgtctctccaccacacacacccgccaagagacgcaaaaccactcggaggtcagtcagt
agcggtttggacactcccgctctcacctccacggttatacagagcagagttgcgcccaca
caccaacagtctcggccaccgcctacagaattcagctcagatcagccatcagaggatgac
tttatagaggggagtgtgcagaggaaggccatgaatagcaggagggagcaggagagttct
gaacacagcggtgtatcctctcagctccacatgctttctctgattgaggagaactttgag
gaggaggatgaacctgatatagaggactattatgatgatgaagactcagatggggttggt
gcagtatctctgccatcaacacgccactccactagtttcctagaagacctgtttgaatga
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