Ictalurus punctatus (channel catfish): 108256721
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Entry
108256721 CDS
T04658
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
108256721
04121 Ubiquitin system [BR:
ipu04121
]
108256721
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
90S particles
Other 90S particles
108256721
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108256721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_WDR75_1st
eIF2A
ANAPC4_WD40
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
KNTC1_N
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
UvrB_inter
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
108256721
NCBI-ProteinID:
XP_017309366
Ensembl:
ENSIPUG00000022430
UniProt:
A0A2D0PVB8
LinkDB
All DBs
Position
23:14799834..14809598
Genome browser
AA seq
445 aa
AA seq
DB search
MKVKVLCRNPDDYVRETSKDIQRVPRNYDPTLHPFEVPREYTRALNATKLDRLFAKPFVA
SLDGHRDGVNCIARHTKSLSTVLSGACDGQVKLWNLSKRECLRTIQAHEGFVRGICSRFC
GTSFFTVGDDKTIKQWNMEAPGYGVQEEPLTTILGKAVYTGIDHHQSEGTFATCGQTVDI
WDEQRSSPIRSFSWGVDSFSCVRYNPVETELLASCASDRSIVLYDTRESAPLKKVVMQLR
SNTLCWNPMEAYNFTCSNEDYNLYTYDMRRLDTPVTVHMDHVSAVLDVDYSPTGREFVSA
SFDKTVRIFPKHSGHSREVYHTKRMQHVICVRWSADDKYILSGSDEMNIRIWKANASEKL
GVLTAREKAAIHYNQKLKEKFQHHPQVKRIARHRHLPRDIFKQKRELREMKEARRRKEQN
VRKHSKPDSVPLVTEKEKHVVTVVE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgaaagtgctttgtcggaacccggacgattatgttcgagaaacttcaaaagat
atacagcgcgttcccaggaattacgatcctactcttcatccgtttgaggtcccgagggaa
tacaccagagccctgaatgccactaagctcgatcggctgttcgcgaagcccttcgtggcg
tcactggacggccacagagacggcgtcaactgcatcgccaggcacaccaagagtctctcc
actgtgctgtccggagcttgtgatggacaggtaaagctttggaacctgagcaagcgggaa
tgtctgcgaacgatccaagcgcatgaaggcttcgtcaggggaatatgctcacgcttttgt
ggaacttcgtttttcacggtaggagacgataagaccattaagcaatggaacatggaggcc
cctggttatggggtgcaggaggaaccactgactactatacttgggaaggctgtgtacaca
ggcattgaccatcaccagagtgaaggcactttcgcaacatgtggccagacggtggacatc
tgggacgagcagaggagcagccccattcgttctttcagctggggtgtggacagcttcagc
tgcgttcgatataaccccgtggagactgaactccttgccagttgcgcctcggacagaagt
attgtactgtatgatacgagagagtcggctccacttaaaaaggttgtaatgcaattgaga
agtaacacactttgctggaaccccatggaagcatataatttcacatgctccaatgaggac
tataatctgtacacctatgacatgaggcgtctggacacaccagttacagtacacatggac
catgtctccgctgtgcttgatgtggactactcgcccacgggaagagagtttgtgtcagcc
agttttgacaagacggttcgcatcttccccaaacacagcggccacagcagggaggtgtac
cacaccaagcgcatgcagcacgtcatctgtgtgagatggtcagcggacgacaagtacatc
ctgagcggctcagacgagatgaacatccgcatctggaaggccaatgcctcggagaaactg
ggagtgctcacagctagagaaaaggccgccatacactacaaccagaagctgaaggagaag
ttccagcaccacccgcaggtgaagcgcatcgcccgccatcgccacctgcccagagacatc
ttcaaacagaaacgagagctacgggagatgaaggaggccagacgcaggaaagaacaaaac
gtacgcaaacacagcaagccggactccgttcccttggtgaccgagaaggagaaacatgtg
gtaactgtagtggaataa
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