Ictalurus punctatus (channel catfish): 108256922
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Entry
108256922 CDS
T04658
Name
(RefSeq) small nuclear ribonucleoprotein Sm D1
KO
K11087
small nuclear ribonucleoprotein D1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108256922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108256922
03032 DNA replication proteins [BR:
ipu03032
]
108256922
Spliceosome [BR:
ipu03041
]
Complex A
U1 snRNP components
Sm proteins
108256922
U2 snRNP components
108256922
Complex B
U1 snRNP components
108256922
U4/U6.U5 tri-snRNP components
108256922
Complex C
U2 snRNP components
108256922
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
108256922
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
EBNA2_Core
Gemin7
YomU_Tube
Hfq
SM-ATX
API5
AAA_RNF213_3
Motif
Other DBs
NCBI-GeneID:
108256922
NCBI-ProteinID:
XP_017309693
Ensembl:
ENSIPUG00000003576
UniProt:
A0A2D0PT08
LinkDB
All DBs
Position
24:16211829..16216677
Genome browser
AA seq
119 aa
AA seq
DB search
MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSI
RGNNIRYFILPDSLPLDTLLVDIEPKIKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR
NT seq
360 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcgtgcgatttttgatgaaattgagccatgaaacagttaccattgagctgaag
aatggcacccaggtccacggcacaatcacaggtgtggatgtgagtatgaacactcacctg
aaagcggttaagatgaccctcaagaacagagagcccactcaactcgagtctctgagcatc
cgcggcaacaacatccgctacttcatcctgcctgacagccttccccttgacaccctgctg
gtggacatcgagcccaaaatcaagtcgaagaagagggaggcggtggctggccgtggacga
ggaagagggagaggacgcggcagaggaaggggacgtggaagaggtggaccgaggagatga
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