Ictalurus punctatus (channel catfish): 108257060
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Entry
108257060 CDS
T04658
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03440
Homologous recombination
ipu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108257060
03460 Fanconi anemia pathway
108257060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
108257060
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108257060
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
108257060
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Topoisomerases
108257060
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
108257060
FA (Fanconi anemia) pathway
108257060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Lar_restr_allev
T2SSF
DUF6261
Motif
Other DBs
NCBI-GeneID:
108257060
NCBI-ProteinID:
XP_017309955
Ensembl:
ENSIPUG00000016972
UniProt:
A0A2D0PXW3
LinkDB
All DBs
Position
24:complement(6157042..6171971)
Genome browser
AA seq
999 aa
AA seq
DB search
MIIVGRLLSRLADQSLISRSLSVSMMRRAQIKKVLCVAEKNDAAKGIAEIMSNGRSRRRE
GYSVYNKIYEYEYHLFGQDVTVCMTSVSGHLLGLEFKAPFQKWHSCNPVLLFDAEVEKYC
PENFVPIKRTLEREVRQCQALVIWTDCDREGENIGYEIIDVCKAVKQNIQVFRARFSEIT
PSSIRRACESLTEPDINVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPESLSNQLISYG
SCQFPTLGFVVERFKAIQAFIPENFFKIKVVHEPNEEESVEFSWKRHRLFNHTACLVLYH
MCMEDPIARVISVTSKPKSKWRPLPLDTVELEKLSSRKLKISAKETMRIAEKLYTQGFIS
YPRTETNMFPTNLNLVPLVEQQTQDHEWGAFARGILESGGPTPRNGNKSDQAHPPIHPTK
YTNNLQGNEKRLYEFIVRHFLACCSKDAQGQEVTVEIDIAEEKFSASGLTIIARNYLEVY
PFDKWYNKVIPLYTPETTFQPTAIEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEH
IETIKSRMYVGLTDDQRFLPGELGMGLVEGYNSMGYEMSKPDLRAELEADLKLVSEGRKD
KTSVLRHHVSKYKTVFIESVRKAKKLDEALSNYLGQAQEYTEQEEQELEMPLPVRKCPQC
GRDMVLKKKKDSAGKFLSCMGYPSCKAAVWFPDSVLEVSRDDSICPTCRPHPVNMLKFKF
KRGSLPPGMPLEFVGCIGGCDETLREVLNLKYLRGVGGDSSTQVNPSSASRQSTRPVIDP
ALQSRSENRPPPPNSTPAWSIQPSHSIQNGVVCNCGQDALLLTVRKEGPNQGRQFYKCNT
GNCKFFLWAEQQNDQLGSAGSIGSTGQPGPSCQPPRPSLGFGNTPQQMQGRRSGEGREEH
MCNCNVHAVTRTVMKDGPNKGRVFLTCGKPRDQQCGFFQWVDENVAPAAVGNVRGNGSEW
TASKKNEASSSKAAAPKRPRTCGICRQPGHTRSTCPQGQ
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatcattgtgggaaggttactgtctcggctggcagatcagagccttattagtcgctcg
ttatccgtgagtatgatgagaagagctcagattaagaaggtgctttgtgtcgctgaaaag
aacgatgcagccaaaggcatcgcagagatcatgtctaatggcagatctagaagaagagaa
gggtactcagtgtataacaagatctatgagtatgaatatcatctttttggacaagatgtt
acagtgtgcatgacgtctgtgtccggacaccttttaggtctcgaattcaaagctcctttt
cagaaatggcacagctgtaatccagtcttgctgtttgatgccgaggtggaaaagtattgc
cctgaaaactttgtcccaattaagaggaccttggagagagaggtcagacagtgccaagct
ctggtcatctggactgattgtgatcgcgagggagaaaacataggctacgagatcattgat
gtctgcaaagctgtcaagcagaacattcaggtgttccgtgctcggttctctgagattact
cctagttccattaggagagcctgcgagtctctaaccgagccagacattaacgtcagtgat
gctgtggacgtcaggcaagagctggatctccgcattggagccgcgtttacaaggttccag
actttacggttacaaaagatcttcccagagtctctatctaatcagctgatcagttacggg
agctgtcagtttccgaccctgggctttgtggtggagaggtttaaagctattcaggcgttc
atccctgagaacttctttaaaattaaagtggttcatgagcctaacgaagaggaatctgtg
gaattcagttggaaaaggcatcgcctgttcaaccacacggcttgtcttgtgctttaccat
atgtgcatggaggaccccatagcaagagtgatttctgtaacaagtaaaccaaaaagcaaa
tggcgtccgttaccccttgacactgtggaacttgaaaaactgtcttcaaggaaattgaag
ataagtgcgaaagagaccatgagaatagccgagaagctgtacacacaagggtttatcagt
taccctcgtactgagaccaacatgtttccgacaaacctgaacttggtcccacttgttgag
cagcagactcaggaccacgaatggggggcttttgctcgaggcattttggaaagcggtggg
ccgacacctcgaaacggaaacaaatcggaccaggcccatcctcccattcaccctaccaaa
tacacaaataatctacagggaaatgagaaacggctgtacgagtttatcgtacgtcacttc
ctggcgtgttgctccaaggacgcacagggccaggaggtgactgtagaaattgacattgct
gaagagaaattctctgcaagtggactgacgattattgcccgtaactatctggaagtttac
ccgttcgacaagtggtacaataaggttattccattatatacacctgaaacgacattccaa
ccaactgctattgagatggtggaaggacagaccagcccacctcagctcctcaccgaggct
gacttgatttctctaatggagaagcatggcatcggcacggacgcaacgcacgctgaacac
atcgagaccatcaagagccgcatgtacgtgggcctgacggacgatcagaggttccttcct
ggagagcttgggatgggcctcgttgaagggtacaattccatgggctatgaaatgtctaag
ccggacctgagggcagagctggaggcggacctgaagctcgtgtctgaagggcggaaggac
aagacgtctgtcctcaggcatcatgtgtcaaaatacaagacagttttcatagaatctgtc
aggaaggcgaagaagttggatgaggctctgtccaactatttaggccaggcccaagagtat
acagagcaagaagaacaggagttagagatgccactccccgtgcggaagtgtccgcagtgc
ggccgcgacatggtcctgaagaagaagaaggacagcgcggggaagtttctgtcatgcatg
ggctacccgagctgtaaggcagcagtatggtttccagactctgtgctggaggtcagcaga
gatgacagcatctgtccaacatgtcgcccacatcctgtcaacatgctgaagttcaagttc
aaaaggggaagtctacctccagggatgcctcttgagtttgttgggtgtattgggggctgt
gatgagactctgagagaggtcttgaatttgaagtatctccgtggagtaggaggagattcc
agcactcaggttaatcccagttcagcatcacgccagtcgactcgtccagtaattgatcca
gcacttcagtccaggtctgagaacagaccaccaccacccaactctacaccagcatggtcc
atacaaccatcacattctatccagaacggtgttgtgtgtaactgtggccaggatgcactt
cttctcaccgtgcgtaaagagggtcccaaccaaggtcgtcagttctacaagtgcaatacg
gggaactgtaagttcttcctgtgggccgaacagcagaacgaccagcttgggtcagcaggg
agcatcggctcaacaggacaaccgggccctagctgtcaacctcccagaccttctcttgga
tttggaaacacaccccagcagatgcagggcagaagatcaggggaaggtcgagaagagcat
atgtgcaactgtaatgtacatgcggtcacgaggactgtcatgaaagacgggccgaacaag
ggcagagtgttcctcacctgtggcaaaccccgggatcagcaatgtggcttctttcagtgg
gtggatgagaacgttgctcctgctgctgtagggaacgtgagaggaaacggcagtgaatgg
actgctagtaagaagaacgaagcctcttcaagcaaagctgctgctcctaaaaggccaagg
acttgtgggatttgccgtcagccgggccacacgcgcagcacctgtcctcagggccagtga
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