Ictalurus punctatus (channel catfish): 108257107 Help Entry 108257107         CDS       T04658                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism ipu  Ictalurus punctatus (channel catfish) Pathway ipu03040   Spliceosome Brite KEGG Orthology (KO) [BR:ipu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     108257107  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ipu03019]     108257107    03041 Spliceosome [BR:ipu03041]     108257107 Messenger RNA biogenesis [BR:ipu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      108257107 Spliceosome [BR:ipu03041]  Complex B   Other components    Prp19-related factors     108257107  Complex C     108257107 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf TPR_2 TPR_12 TPR_8 TPR_16 ARM_TT21_C TPR_15 ARM_TT21 RPN7 NRDE-2 Tcf25 LTN1_E3_ligase_6th TPR_1 Motif Other DBs NCBI-GeneID:  108257107 NCBI-ProteinID:  XP_017310022 Ensembl:  ENSIPUG00000005933 UniProt:  W5UE93 LinkDB All DBs Position 24:complement(18189534..18200756) Genome browser AA seq 849 aa AA seqDB search MPVFNGKQDVVFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERALKELP GSYKLWYNYLRERRKQIKGKCVTDPAYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQCK ITRSRRTFDRALRALPVTQHSRIWPLYLKYARKLPLPETSIRVYRRYLKLSPENAEEYID YLRSVGRLDEAAVRLAAVVNDEGFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR GGLTRFTDQLGRLWCALADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES MIAAKMETTSEMGQDQDDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVN LYEGIPRQIINTYTEAVQTVDAVKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN YKHVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDSSEPVQNRVYKSLK VWSMLADLEESLGTFQSTKSVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE YGLARHAMAVYERSTQAVEAEERHLMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTANFWQAWKEFEIRHGNEDTIREMLR IKRSVQATYNTQVNFMSSQMLKATTSVTVSDLAPGQSGVDDMKMLEQKAQQLAAEAEQDK PKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDDDDDEGDGDGEPDEVQLEQKSVPT AVFGGLKDD NT seq 2550 nt NT seq  +upstreamnt  +downstreamnt atgcccgtttttaacggaaagcaggacgttgtgtttgaggaagatgatttgccttacgag gaagaaatcatcaggaacccgtactcggtgaagtgctggatgcgctacatcgagcacaaa caaaacgctcccaagtcagtgctgaatatgatttacgaacgagcgcttaaagaactaccg ggcagttacaaattgtggtacaactacctgagagagaggaggaagcagataaaaggtaaa tgcgtcacagatccggcgtacgaggaggtcaacaactgccacgagagagcgctggtgttc atgcacaagatgccgaggatatggctggattactgtcagttcatcgtgtctcagtgcaaa atcacaagaagccgccgcacgttcgaccgagcgctccgagctctgcccgtcacacagcac tcgcgcatctggcccctgtacctcaaatatgctcggaagttacccctgcctgagacctcc atcagggtttatcgccgttatctcaagctctctccagagaacgcggaggagtacatcgat tacctgcgctcggtaggacggctggatgaggcagcggtccggctagcagccgtggtcaat gacgaaggttttgtctcaaaagaggggaagtcaaactatcagctctggcacgagctttgt gacctcatctcccagaacccagacaaggtgacctcgctgaacgtcggcgccatcatccgc ggtggtctcacccgcttcacggaccagctgggcaggctctggtgcgccctggccgattac tacatccgcagcggtcacttcgagaaggcgcgtgacgtgtacgaagaggcgattcagacc gtcgtcaccgtacgagacttcacgcaggtgttcgacagctacgcccagtttgaagagagc atgatcgccgccaagatggagaccacgtccgagatgggacaagaccaagacgatgacatc gatctggagttgcgcttggcccggttcgagcagctgatcacgcgccggccgctcttattg aacagcgtgctgctgcggcagaacccacacaacgtccacgagtggcacaagagagtcaat ctctacgaaggcattcctcgacagataataaacacctacactgaagctgtgcagacggtg gacgctgtgaaagccacggggaagcctcactccctctgggtgtcgttcgcccggttctac gaggataacgaacagctggatgatgcccggacgatcttcgagaaggccaccaaggtgaac tacaagcatgtggacgacctagcagcagtgtggtgtgaatacggagagatggagttacgg cacgagaactacgaccaggcgttacggatactcaggaaagctacggcgatcccctcgagg aaagcagagtactttgattcctcagaaccagtgcagaatcgagtgtataagtccctgaag gtttggtctatgctggcggatttggaggagagcctcggcaccttccagtcaactaaatct gtgtacgaccgcattattgacctgcgcatcgccacgcctcagatcatcatcaactacgcc atgttcctcgaggaacacaattactttgaggaaagtttcaaggcatacgaacgcggcatc gcactcttcaggtggccaaacgtgtacgacatctggaacacgtacctcaccaagttcatc gatcgctacggaggcaagaagctggagagagcgcgagacctgttcgagcaggctttggac gggtgtccaccgaagttcgcaaaaaccatctacctgctgtacgctaagctagaggaggag tatggactggcccgccatgctatggctgtgtacgagagatcgacgcaggctgtggaggct gaagagcgccaccttatgttcaacatctacattaagagagctgcggagatctacggagtc actcacaccagagccatctatcagaaagccattgaggttctcccagacgagcatgcccgg gacatgtgtctacgcttcgctgacatggagagcaaactgggcgagatcgatcgtgccaga gctatttattcctactgctcccagatctgtgatcccaggatgacggctaatttctggcag gcgtggaaggagtttgagatccggcacgggaacgaggacacgatccgcgagatgctccgg ataaagagaagcgtccaagcgacctacaacacgcaggtcaacttcatgtcctcgcagatg ctcaaagcgaccactagcgttacagtgtccgaccttgccccaggccagagtggcgttgat gacatgaagatgttggagcagaaagcgcagcagctggctgcagaagctgagcaggacaaa cccaaacctaaagacaagatcctctttgtcaggagtgacacctctcgcagcgaactggct gaactagccaaacaggctaacccagacgagattgacattgacgacgacgacgatgatgat gagggagacggagacggagaaccagacgaggtgcagctcgagcagaaaagcgtccctacg gctgtgtttggaggactgaaggacgactga

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