Ictalurus punctatus (channel catfish): 108257112
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Entry
108257112 CDS
T04658
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108257112 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108257112 (ddx5)
03009 Ribosome biogenesis [BR:
ipu03009
]
108257112 (ddx5)
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108257112 (ddx5)
Spliceosome [BR:
ipu03041
]
Complex A
U1 snRNP components
U1 related factors
108257112 (ddx5)
Complex B
108257112 (ddx5)
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Pre-60S particles
Helicases
108257112 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
108257112
NCBI-ProteinID:
XP_017310033
Ensembl:
ENSIPUG00000007815
UniProt:
A0A2D0PU17
LinkDB
All DBs
Position
2:25586421..25592624
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AA seq
625 aa
AA seq
DB search
MPGYSDRDRSRDRGGYGNNYSSGPPRFGGSRGGPPAGKKFGSPGDRLRKKHWNLDELPKF
EKNFYQEHPDIAHRSSQEVEQYRRSKEITVKGRDCPKPTIRFHEANFPSYVMDVINKQNW
TDPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA
PTRELAQQVQQVAVDYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFVETKRRC
DDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVI
NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNFKQANDLVSVLREANQAINPKLIQM
AEDRGGRSRGGRGGGYRDDRRDRYSGGRRDYNYNQDSHSNDRSYDNGPKKPFSNKTQNGA
AYSNGSGSYNENSNNGFNGAYNGQSNFNGSQAGNFGSQGFQNKQFSANQGAAPNGANHNA
QFPFNSQQQPMQPMMPFSMPPPNFQ
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcccggttattccgacagagaccgcagccgcgacagaggtggttatggcaacaattac
agcagcgggcctccgcggtttggagggagtcgaggtggtccgccggccgggaagaagttt
ggcagtcctggagacagactgcggaagaaacactggaacctggacgagctgcccaaattc
gagaagaacttctaccaagagcacccggatatagcgcacaggtcatcgcaagaggttgaa
cagtacaggaggagcaaagagatcacagtcaaaggcagagactgtcccaaacctacaatt
aggtttcatgaggcaaactttccctcatacgtcatggatgtgatcaataaacagaactgg
actgatccaactccgatccaagctcaggggtggccactggcactaagtggcaaagatatg
gttggcattgcccagaccggatctgggaaaacactctcgtatttgcttcctgctattgtg
cacataaaccaccaacccttcctcgagcgtggagatggaccaatttgcctggtgttggct
cccactcgtgagttagcgcaacaagtccagcaggtcgcagtagactacggcaaagcttct
cgcctgaagtccacctgcatctatggaggagcacctaaaggaccacagattcgtgaccta
gagagaggagttgagatctgcattgctactccagggaggcttattgacttcctggaagct
ggaaagacaaatctgcgccggtgcacatatctggtgctggacgaagctgatagaatgctg
gacatgggctttgaacctcaaatccgtaaaattgttgaccagatcaggccagacaggcag
actctgatgtggagtgctacctggcctaaagaggtgcgtcagctggctgaggacttcttg
aaagattatgtccagatcaatgtgggagcgctgcagctcagtgccaaccacaacatcctg
cagatagtggatgtatgcaacgatggagagaaggaggataagttgctgcgcctgctagag
gagatcatgagcgagaaggagaacaagaccatcatctttgtggaaactaagaggaggtgt
gatgacctcacaaggaggatgcgtagggacgggtggcctgcaatgggtatacatggagac
aaaagtcagcaggagagagactgggtgctcaatgaattcaagtttggcaaagcacccatt
ctcattgctactgatgtggcatcaagaggtctagatgttgaggatgtcaagtttgtaatt
aatttcgattatcccaacaactctgaggactacatccaccgcattggccgcacagcacgt
agccagaaaaccggaacagcctacaccttcttcacgcctaacaactttaagcaggcgaat
gaccttgtctctgtcctccgtgaagccaaccaggccatcaatcccaaactcatccagatg
gcagaagacagaggaggtcgttcaaggggcggtcgaggtggcgggtatagagacgatcgc
cgagatcgttactccggaggcagacgggactataattacaaccaagacagtcacagcaat
gatcgcagttacgacaacggaccaaagaaacccttcagtaacaagacacagaatggggca
gcatacagtaatgggagcggcagttacaatgaaaacagcaataatggctttaatggggct
tacaatggacagtccaactttaatggcagtcaggctggtaactttggaagccagggtttc
cagaacaagcagtttagtgccaaccagggagctgctccaaatggtgcaaatcacaatgca
cagtttcccttcaactctcagcagcaaccaatgcagcccatgatgcccttttccatgccc
cctcctaactttcaatag
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