Ictalurus punctatus (channel catfish): 108257221
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Entry
108257221 CDS
T04658
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108257221
Membrane trafficking [BR:
ipu04131
]
Protein recycling
Others
EARP complex
108257221
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
108257221
NCBI-ProteinID:
XP_017310280
Ensembl:
ENSIPUG00000022745
UniProt:
A0A2D0PYU2
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All DBs
Position
24:13270468..13422311
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AA seq
987 aa
AA seq
DB search
MQKIKSLMSRQGLKSPQESMADMSPMESFRVPSKEELRELREQPIDPQAEQEIIDSIEEV
YYSNDSTDMVQYELEKLPPDLNLQELEEYRDKLKRQQAAVSKKVADLILEKQPSYVKELE
RVTSLQTTLQLAAVICTNARRQLGFAKEGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELHSKLQDTLEQIEEQLDVA
LSKTCKHFDVAHYTRVQLAYSLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITPDSYIPCLTDLCKALWEVMLSYYRTMQWHEEHDKEEVKDADTD
GTSAEGSEESTVGHSYVKKKLEHGLSRIWQDVQLKVKAYLLGTDMSNFKYDDFIVVLDVI
SRLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFS
ITQLHEFKFMGQCRSPSVSPSRQPTSSDPEELCLFEQYILGGNPFEMQIDNKEEESEDVL
ASNGYESEELEKSVYQDYDSDSDVADELKQDFVDEQTGDVPNKGVSRETLRSRKRSDYNL
NKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYSVYTFFGRNDM
HAPSPSTPTSGSCPAAPRLGCWYESSGLGLISSRLRTTLNRIQESLIDMEAGGENVATHG
PSEDRKEKVPSPHLSQLVVLTASSTLYGLAERVVATESLVFLAEQFELLQPHLDTMMPPA
KKPFLQQFYSQTVSTASELRKPTYWIVAAKAIDYEQMLLLMAGVKWDIKEIMSQHNVYVD
VLLKEFEEFNKRLGDVSKQVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGRALM
QLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLANLVN
VCLGSHINKKARQKLLSAIDDIDRPKR
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaattaaatctttaatgtcccgacagggcttgaaaagccctcaggagagtatg
gcggatatgagtcccatggagagcttcagggtcccgagcaaggaggagctgagagagctg
agggagcagcctattgatccgcaggctgagcaggagatcattgacagcatagaggaggtg
tactactccaacgactccactgacatggtgcagtacgaacttgagaaacttcccccagat
ctgaacctgcaggagctggaagagtacagagataagctgaagagacagcaagcagctgtt
tcaaaaaaagttgctgatcttattctagagaaacagccatcgtatgttaaggaactggag
cgagtaacatccctgcaaaccacactgcaactggctgctgttatctgcaccaatgctcgg
aggcagcttggttttgctaaagaaggcttcaccgaagcaagtcttggactcctggccaac
cagagacgcaggcagctgttgacaggattgttaaagtctttaaggaccataaagacattg
caaaggacagatgtcagactgagtgagatgctggaggaggaggactatccaggtgcaatc
cagttgtgtttggaatgtcagaaggctgccagcactttcaagcactacagctgcataagt
gagttgcactcaaagctgcaagacactctggaacaaatcgaggagcagctggatgtagcg
ctgtcgaaaacctgcaagcactttgacgtcgctcactacaccagagttcagcttgcgtac
tcgctattgggcaagacacagacggcgatggatcagcttcacatgcacttcacccaggcc
attcacaacaccgtgttccaggtggtgctgggatatgtggagctgtgtgccggcaatgct
gacaccaaattccagaagatgcagtataaggatctgtgcacgcacatcactccagacagc
tacatcccctgcctgactgacctgtgcaaagcattgtgggaggtgatgctcagttactac
cgaaccatgcagtggcatgaggagcatgacaaagaggaggtgaaggatgctgacacagat
ggtactagcgccgaaggctcagaggaatctacagtgggccacagctatgtgaagaaaaag
cttgaacatggccttagccggatttggcaggacgtccagctgaaagtgaaagcctattta
ctggggacggacatgtccaacttcaagtatgatgacttcattgtggtgctggacgttatt
agcaggctaatgcaggtgggagaggagttctgtggcagcaagtctgaggtgctacaggag
tcaattaagagacagagtgtgaactacttcaagaactatcacagaacacgcctggaggag
ttgcgcatgtttctggagaatgaaacatgggagttgtgtcccgtgaagtccaacttcagc
atcactcagcttcacgagtttaaatttatgggccagtgtcgttcgccatcagtgtcccca
agcaggcagccaacctctagtgaccctgaggagctgtgtctctttgagcagtatattctg
ggaggaaacccttttgagatgcagatcgacaataaagaagaggagagtgaggatgtcctg
gcgtccaatgggtacgagtctgaagagctggagaagagtgtgtatcaagactatgacagt
gacagtgatgtggcagacgaactgaagcaggactttgtggatgaacagactggagacgta
cccaacaagggtgtgtccagagagactctgcgcagcagaaaaagatcagactacaacctt
aacaaagtcaacgcccccattctgaccaacaccactcttaacgtgattcgtctggtcggc
aaatacatgcagatgatgaacattttaaaacccatcgccttcgacgtcatccactgcgtg
tcacagctgttcgactactacctgtactccgtgtacaccttcttcggccggaacgacatg
catgctccgtctccatccacacccacctcaggcagctgtccggccgctccaagactgggc
tgctggtatgaatcatccggactggggctgattagcagtagactgaggacgacactcaac
cgcatccaagagagtctcatagacatggaggcaggaggagagaatgtagccacccatgga
ccctctgaggaccgaaaggagaaggtgcccagccctcacctgagccagttggtggttctg
acagccagtagcacgctgtatggtctagcagagcgcgtagtcgccacagagtcacttgtg
ttcctggctgaacagtttgagctacttcagcctcatctggacaccatgatgcctccagcc
aagaagcctttcctgcagcagttctactcccagacggtgtccacagccagtgagctacgc
aagcccacttactggatagtggcagctaaagccattgattatgagcagatgctgctgcta
atggctggagtgaaatgggacattaaagagataatgtcgcagcacaacgtctatgtggat
gttcttttaaaggaatttgaggagttcaataagaggcttggtgatgtttccaaacaagtg
cggatccccctacctgtttcaaacgttctctgggagcactgcatccgtctggctaaccga
acactagtggagggctatgctaatgtaaagaagtgtagtaacgagggccgggcactgatg
cagctggacttccagcagttcctcatgaagctggagaagctcaccgacctcagaccaatt
cctgataaggagttcgttgagacctacattaaagcctactacctgactgagaatgacatg
gagcagtttattaagaaccacagggaatactccatgaagcagctggccaacctggtcaac
gtctgcctcggctcccacatcaacaaaaaggccagacagaaactcctctcagctattgat
gacattgaccgaccgaaaagataa
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