Ictalurus punctatus (channel catfish): 108257272
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Entry
108257272 CDS
T04658
Name
(RefSeq) nuclear pore complex protein Nup153 isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
ipu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108257272
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108257272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108257272
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108257272
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nup_retrotrp_bd
Motif
Other DBs
NCBI-GeneID:
108257272
NCBI-ProteinID:
XP_017310383
Ensembl:
ENSIPUG00000014605
UniProt:
A0A2D0PV24
LinkDB
All DBs
Position
24:complement(4819510..4845804)
Genome browser
AA seq
1460 aa
AA seq
DB search
MAATGGGKIRTRRYHIVSKPYAKGRQQPGLISRVTDTVKSIVPSWLQKYFRNGEVAEGGE
THVQVEQNNVPTPPNGSQEDGRNQSDGRNSPEPSTSNAEPSTSRASLNFQDALSRPPLNR
SHLHFPSHDGSPALGGPLFSQPSTSTAPFPASPFAVSSSFSLVKEIKDSSSQHEDDNIST
TSGFSSRASDKDVPTSKTAPLLWSPETERTPSGSQLAHTSLKKPAFNLSVFGTSSSSTLS
SSVLNSSQLGDSPFYPGKTTYGGAAAAKTARSRPSTPYQTPVRRQIKAKPAGAQPCGVTS
ATARRILQSLERMSSPLADAKRIPSTISSPSSTSLNHTDLDGRNFQAKRKKLEPAGPPVQ
KLVIPAATAVSGNRSMSFRPSLTPGSVSRVLEKGSKETPVRRSPQIPDGVSAAPASTSSL
LYPLSGTPAASVTGAGGGKMKRERSVRPSSKRPDDEVAEVPNLPAVSLPISNFNLPTFSF
SSQLPPLTLTPSTTPMPRVSEQASNSKETNAMSTPASVSFTFSSPIVKATAASPMSFSPS
SGFTFSAPTMKTTTSMSNGKLAPAIVTSKKPNESNEDFEGPFKPAKALKQGSVLDILKGP
GFASPTQNSSETEPVKPTRSTTTKKIPGFGEKFKPAAGSWNCGTCLLQNKPSDKKCVACQ
APQPSTDSSSKSDSKPAKAPAASLSSLFAPPAGSWECDTCMVQNKPEVVKCVACDTAKPG
TGVKPALTQPPVSEVSSTPPTTTSTPATTSTSTTITTTSGLLSFADKFKKPEGAWDCDVC
MVQNKAQDAKCVACQSAKPGAVATPSQAASSQPPASTPASTAPVLGFGDKFKKPEGSWEC
DVCSVQNKAEDQQCVACQSAKPGAKVETKGFGTQSSSIKSSSPAFKFGTSSSSNSTSGEL
KFAGTFSDSTSTVSFKFGNPSSDSTAPSAGFKFGGSSSETPSGGFKFGGATSEHTSAGPS
STEGFKFGGSSNGFKFGATSTSESTGELKKSESQNSGAGFKFGGSSAINFGSSATSTAAT
TAASAGFAFGLSKPEGKTGSNPSFSLSAPKAKAEKDDAPPSTEAVSATANAVPVFGKPPV
AEPSSAELFVVEGTPWKTSTTTVMFSHLEEKKDISTPSTGFVFSTAKEADKPAPSVGFNF
SKPDPPKELPKLAFAFGKATEPTETPKPTFGFGQNVTENAAPNPAFAFMSSSSTTPASSS
LAPSLFGTPSSSSLAPTPAPSSTFSFGQSSSSDAPSKTFMFGQQQETQPAPAEPPAAPNP
AQPFVFGVGNSSNTSPFSFGGAASTPATTAPAPSAAFGFTATTSTSGFGSGQTPAFGSSQ
PTVSSFGSAASSFTATPSAAPAFGTKPSAPVFGQQPNSTPAFGSTASSGQGGFPFGGTTA
FGGTSSNNSSIFTFGAGSGATAGPAASPAMSAQPAVPGGGFSFSQPPAFNIGSAKSSNVA
PTGQHGIAGRKIKTAVRRRK
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacaggaggagggaaaatcagaacaagacgatatcatatcgtttctaaaccg
tatgccaagggcagacagcagcctggtttaatcagccgagtaacagacaccgtgaagagc
atagtcccgtcttggctacagaagtacttcagaaacggtgaggtagctgaaggaggagag
actcatgtgcaggtggagcagaacaacgtacctactcctcccaatggcagtcaggaagac
ggacgtaatcagtcagacggacgcaactccccagaacccagcaccagtaatgcagaaccc
tcgacaagcagagcatcgctgaacttccaggacgctctctccagacctccactcaatcgc
tcacacctacatttcccttcccatgacggctcccctgccctggggggccctctcttctcc
cagccctccacatctacggctccctttccagccagcccctttgctgtaagctcaagcttc
tcgctagtgaaggagatcaaggactccagctctcagcatgaggatgacaatatctccacc
acgagtggcttctcatcccgagcgtctgataaagatgtacccacgtcaaagaccgcacca
ctcctctggtccccagagacagaacgcacaccgtccggatcacagctggcccatactagt
ctgaagaaaccagccttcaacctgtcggtcttcggcacttcctcatcatcaacgttgagc
agttcggtgctgaactcaagtcagctgggggattctcccttctatccaggcaagactacg
tatggaggcgccgcagctgccaagacggctcgttcacggccgagcacaccttatcagact
cctgtgaggagacagatcaaggccaaaccggcaggagctcagccttgtggagtgaccagc
gcgacagccagacgcatcctgcagtcactagaacgcatgtccagccctcttgctgatgcg
aaaagaattccatcaacaatttcttctccctcgtcaacatcattgaatcacacagatcta
gatggtagaaatttccaagctaagaggaaaaagctggaaccggctggcccacctgtgcag
aagctggtgatcccagctgccacagctgtgtctggtaaccgctccatgtctttccgccct
tcgcttacccctggatctgtgagccgagtgttggaaaagggcagcaaggagacgcctgtt
aggcggtcccctcagatcccagatggcgtttcagctgctccagcaagcacaagtagtctg
ttgtacccgttgtccggcacacctgctgcaagtgtcacgggtgccggtgggggcaagatg
aagcgagagaggagtgtccgaccttcctccaaaagacctgacgatgaggttgctgaagtg
ccgaatctgcctgccgtttctctgccaatcagtaacttcaatctgcccaccttcagtttc
tcctcccaactccctcccttgacactcacccccagcaccacgccaatgccccgggtctct
gagcaagcatccaacagcaaggagacaaacgccatgtctacacctgcttctgtctcgttt
accttttcttcacccattgtcaaggcaacagctgccagtccaatgtctttttctccatca
tcgggatttaccttcagcgcacctactatgaaaaccacaacttccatgtcgaatgggaaa
cttgctccagcgatagttacatcaaaaaaacccaacgaaagtaatgaggactttgaaggg
cctttcaaacctgctaaggccttgaagcagggtagtgttctggatatccttaaaggacct
ggatttgcttctccaacccagaactcctcggaaacagaacccgtgaagccgacacgcagc
acaactacaaaaaagattcctgggtttggagagaagtttaaacctgcagcaggatcatgg
aattgtggcacctgcctgctgcaaaacaaaccctcagacaaaaagtgtgtggcctgccag
gccccgcagcccagcacagactcttcctccaaatcggacagtaaacctgcgaaagcccct
gctgctagtcttagttctttgtttgcccctccagctggaagctgggaatgtgacacctgt
atggtgcagaacaagcctgaggtggttaaatgcgtagcatgtgacacggccaagccaggc
actggagtaaaacctgccctgactcagccacctgtctctgaggtctcctcaacccctcct
actactacttctaccccagccaccacttccacttccaccaccatcaccaccacatctgga
ctgcttagttttgctgacaaatttaagaagccagagggggcgtgggattgcgatgtatgc
atggttcagaacaaagcacaggacgctaagtgtgtagcgtgtcagagcgctaaaccagga
gccgtggcgacaccatcccaagcagcttcatcccagcctcctgcatccacgccagcaagt
actgcacctgtattgggatttggagacaagttcaagaaacctgagggcagttgggagtgt
gatgtctgctctgttcagaacaaggctgaggaccagcagtgtgtggcctgccaatcagcc
aaaccaggcgctaaagtagaaaccaaaggttttggcactcagtcatccagcatcaagtca
agctcccctgctttcaaatttggtacttcaagttcttcaaattcgacctctggggaactg
aaattcgctggcacgttttcagactccacctccacagtgtcatttaaatttggtaatcct
tcatcagactccactgcaccttctgcaggcttcaaattcggcggctcgtcctcagagact
ccttcaggaggattcaaatttggaggagccacctcagaacacacctcagccggcccaagt
tcaactgagggtttcaaatttggtggttcatcaaatggctttaaatttggagcaacctct
acatccgaatctacaggtgaactgaagaagagtgaatctcaaaattctggtgctggtttt
aaattcggaggaagcagtgcaatcaattttggctccagtgccacaagcactgctgctact
acagctgcatcagcgggctttgcgtttggactctcaaaacctgaagggaaaacaggttcc
aatccatcgttcagtttgtcagcacctaaagctaaagctgaaaaagacgacgcccctcct
tccacagaagctgtttcagccactgccaatgccgtccctgtttttggcaagccgccggtg
gctgagccttccagcgctgaactgtttgttgtagagggaaccccatggaagacttcaacc
actactgtcatgtttagtcatctggaggagaaaaaggatatctcaacaccctcaactgga
tttgtgttcagcacagccaaggaggctgacaaacctgcaccctccgtgggcttcaatttc
agcaagccggaccctccaaaggaactccccaaacttgcgtttgcatttggaaaagccact
gagcccacagaaaccccaaagcctacattcggctttggacagaatgtaacagaaaatgca
gcaccaaatcctgcatttgcctttatgagcagttcatccaccacccctgcctcctccagt
cttgcacccagcctctttgggactcccagcagttcgagcctggcccccacccctgctcca
agcagtacttttagttttggccagagctcctcttcagatgcaccttccaagactttcatg
tttgggcagcagcaagaaacccagccagcccccgcagaaccccctgccgctcccaatcca
gcacagccgttcgtcttcggtgtcgggaacagttcgaatacatcacccttctctttcggt
ggtgcagcctctacgccagcaactacagcccctgcaccctcagcagcattcgggtttact
gccaccacgtccacctctggcttcggctctggacagacaccggcattcggctcctcgcag
cccaccgtatcctcttttggatcagctgcatcctctttcacagccacgccgtcagcagct
cctgcttttggaacgaagcctagtgctcctgtgtttggccagcagcccaactcaacacct
gcttttggatctactgcctcttctggccaaggaggcttcccgtttggaggaaccactgct
tttggggggactagtagcaacaacagcagtatatttaccttcggagcaggatccggagca
acagcaggtcctgcagcatcaccggccatgtctgctcagccagcagtgcctggaggaggc
ttcagcttctcacagcccccggccttcaatatcgggtcagcaaagagttccaacgtggca
ccgaccggacagcacggcatcgccggccgcaagatcaaaaccgctgtccggcgtaggaag
taa
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