Ictalurus punctatus (channel catfish): 108257311
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Entry
108257311 CDS
T04658
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108257311 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
108257311 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108257311 (pabpc1b)
03041 Spliceosome [BR:
ipu03041
]
108257311 (pabpc1b)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108257311 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
108257311 (pabpc1b)
Spliceosome [BR:
ipu03041
]
Complex C
Other components
Complex C specific factors
108257311 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBD_DEAH11
RRM_10
RRM_7
RBD_RDR6
RRM_5
RRM_occluded
YflT
Motif
Other DBs
NCBI-GeneID:
108257311
NCBI-ProteinID:
XP_053531237
UniProt:
A0A9F7R9I5
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Position
24:21013980..21022420
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AA seq
525 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHSDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDEKLKEVFSKYGTSRGNAMSIRVMTDDGGKSRGFGFV
SFERHEDAQKAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNL
YVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGR
IVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQA
QNRAAYYPTSQLAQLRPSPRWTAQGVRPQHFQNMQATMRPSAPRPQTFSTMRPASQVPRM
MSTQRVGEFVPSRLFLLASSRVQCIFCIHTSAASDSRSYPPVSVW
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcctagctacccgatggcctccctgtatgtcggagaccttcactca
gacgtgaccgaggccatgctgtatgagaagttcagcccggccggcgccatcctctccatc
cgcgtgtgcagggacatgatcacgcgccgctccctcggctacgcctacgtcaacttccag
cagcccgcggacgccgagcgcgctctagacaccatgaacttcgacgtcatcaaaggcaga
cctgtgcgcatcatgtggtcccagcgtgacccgtcgctgaggaaaagcggtgttgggaac
atcttcattaagaacttggacaagtcgatcgataacaaggccctgtacgacaccttctcc
gcgttcggcaacattctgtcctgcaaggtcgtttgtgatgaaaacggctcgaagggttac
ggctttgtgcactttgagacccaggaggcggccgaaagagccatcgagaaaatgaacggc
atgttgctcaacgacaggaaagtgtttgtgggccgcttcaaatctcgcaaagaacgcgag
gctgagctcggagccagagctaaggagttcaccaacgtctacatcaagaacttcggagag
gacatggacgacgagaaactgaaggaggtctttagtaaatacggtacgtcccgtggtaac
gctatgagtatccgtgtcatgactgacgacggcggcaaatccagaggctttggctttgtg
agcttcgagaggcacgaggatgctcaaaaggccgtggacgagatgaacgggaaggagctg
aacgggaagctgatctacgtgggccgcgctcagaagaaagtggaacgtcagaccgaactc
aagcgcaagttcgagcagatgaagcaggatcggatgacgcgctaccagggcgtcaacctg
tacgtgaaaaacctggacgacggcatcgacgacgaacgcctgcgcaaggagttctctcct
tttggaacaatcaccagtgctaaggtcatgatggacggcggacgcagtaaagggttcggc
ttcgtctgtttctcctcccccgaggaggccactaaagccgtgactgagatgaacggtcgt
atcgttgccaccaaaccgctgtacgtggcgctggctcagcgtaaagaggaacgccaagcg
catctaaccaatcagtacatgcagaggatggccagcgttcgcgctgtaccgaatcccgtg
ctcaacccgtaccagcccgcgccaccgtctggatatttcatggctgccattcctcaggcc
cagaacagagccgcgtattatcccactagtcagcttgcacagctccgcccgagtccacgc
tggactgcgcagggtgtccgacctcagcacttccagaacatgcaagccaccatgaggccg
tcagccccgaggccacagaccttcagcacaatgagacctgcttctcaggttcctcgcatg
atgtccactcaacgcgtgggtgagtttgtaccttcacgtttattcctgctcgcttcgagt
cgtgtgcagtgtatcttctgtattcacacttcagctgcttcagattccagaagttatcct
ccagtttctgtctggtaa
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