Ictalurus punctatus (channel catfish): 108257324
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Entry
108257324 CDS
T04658
Symbol
si:dkey-208k4.2
Name
(RefSeq) P43 5S RNA-binding protein-like isoform X1
KO
K09191
general transcription factor IIIA
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108257324 (si:dkey-208k4.2)
03021 Transcription machinery [BR:
ipu03021
]
108257324 (si:dkey-208k4.2)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108257324 (si:dkey-208k4.2)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIA
108257324 (si:dkey-208k4.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
zf-H2C2_2
TFIIIA_zf-C2H2
zf-C2H2_8
Zap1_zf1
zf-C2H2_STOP2_C
zf-C2H2_6
zf-C2H2_jaz
FOXP-CC
UCMA
zf_C2H2_17_2
zf_C2H2-Disco
zf-DNA_Pol
Motif
Other DBs
NCBI-GeneID:
108257324
NCBI-ProteinID:
XP_017310472
Ensembl:
ENSIPUG00000011935
UniProt:
A0A2D0PWS2
LinkDB
All DBs
Position
24:21315746..21319395
Genome browser
AA seq
373 aa
AA seq
DB search
MSDQQILENAGPVQRLQLFNCVHADCGATFTRRWRLEEHETLHTGARPHKCPEEGCALQF
SRRSHLRRHALKHQGRTISLACCSRCSEASCGKTFYNRDKLRRHVRYAHADKEQYFKCTS
PGCVMTFRKRRALKLHQATHGMSSGFRCSKADCRMTFSTHIARKAHEKTHRGYPCPHAQC
PVVEYTWGKLLKHTATHPASHSCSTCKKTFVKRGALRRHRRTHALQKPVLLCPSDGCQAY
FSTTFNLQHHIRKVHLKLLRHLCSFPGCDKAFAMRESLVRHMLHHDPDAAKLKRRPKRSS
KSWQKRLEGRARRALVEDDLRRLFSLRMRVSRRTKLEANLSGLFNERKIPHHVDPEVNLR
DLFSIKPPQKVEG
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatcagcagattttagagaacgcaggcccagtgcagcggctgcagctctttaac
tgcgtgcacgcggactgcggagcgacgttcacgcgccggtggcgtctcgaggagcacgag
accctacacactggagcgcggccacataaatgcccagaagaaggatgcgcgctccagttc
tcgcgcaggtcgcacctccgcaggcacgcgctcaaacaccaaggcagaaccatcagcctg
gcttgttgttccaggtgctctgaggcgagctgcggaaaaaccttctacaacagggacaag
ctgaggagacatgtccgctacgcgcacgcggacaaggagcagtactttaagtgcacctct
cctggctgtgtgatgacgttccggaagcggcgtgcgctgaagcttcaccaggcgactcac
ggcatgtcctccggcttcaggtgctcgaaggcggactgcagaatgacgttcagcacacac
atcgcccgaaaagctcacgagaagacccacagaggttatccctgtcctcacgcacagtgt
ccggtggtggagtacacctggggtaaactcctgaaacacaccgcgactcacccagcctca
cactcctgctccacgtgtaagaagacgtttgtgaaacgcggcgctttgcggcgacacagg
cgcacacacgcgctgcagaagcccgtgctgctgtgtccgagcgacggctgccaggcgtac
ttctccaccaccttcaacctgcagcaccacatccgcaaagtccacctgaagctgctgcgc
catctctgctccttccccggctgcgacaaagccttcgccatgagggagagtctggtccgt
cacatgcttcatcacgaccctgacgccgcgaaactcaagcggagaccgaagcggagcagt
aagagctggcagaagcgtctggagggtcgagcccggcgcgcgctggtggaagacgatctg
cggcgtctgttctctctgcgcatgcgcgtctctcgccgcaccaagctggaggccaacctg
tctggattattcaacgagcgcaaaatcccacaccacgtcgaccctgaggtgaacctgcgg
gacctcttcagcatcaaacccccgcaaaaggtcgaaggttaa
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