Ictalurus punctatus (channel catfish): 108257422
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Entry
108257422 CDS
T04658
Symbol
colgalt1a
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu00310
Lysine degradation
ipu00514
Other types of O-glycan biosynthesis
ipu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108257422 (colgalt1a)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
108257422 (colgalt1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
ipu01003
]
108257422 (colgalt1a)
Enzymes [BR:
ipu01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
108257422 (colgalt1a)
Glycosyltransferases [BR:
ipu01003
]
O-Glycan biosynthesis
O-linked Gal type
108257422 (colgalt1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
LysX_preATP_grasp
Motif
Other DBs
NCBI-GeneID:
108257422
NCBI-ProteinID:
XP_017310664
Ensembl:
ENSIPUG00000006638
UniProt:
W5UGQ7
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All DBs
Position
24:complement(18508792..18521172)
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AA seq
606 aa
AA seq
DB search
MFGVVLCLLCLLNITGPVLGYFPEERWSPESPLLAPRVVIALICRNSAHSLPYFLGNIER
LNYPKDRIALWVATDHNADNTTYLLRDWLVSVQKLYHYVEWRPKEEPSAYGDEEGPKHWT
NHRYAHVMKLRQAALEAAREMWADYLLVVDCDNLLINRDVLWKLIRENKTIVAPMLESRA
AYSNFWCGMTSQGYYKRTPAYIPIRKQVRKGCFPVPMVHSTFLMDLRKEASRLLAFHPPH
ADYSWAFDDIIVFAFSARMAEVQMFVCNKETYGFLPVPLRSHNTLQDEADSFLHSVLEVN
VRYPPVEPSSYLPPPVRQPDKLGFDEVFMINLQRRSDRRDRMLRALRMQGIDCKVTAAVD
GKAMNVSEIQSMGIHMLPGYSDPYHGRPLTKGELGCFLSHYNIWKEIAERGLKTSLVIED
DLRFEIFFKRRLKNLMSEVEREGLDWDLIYIGRKRMQVDHPEKAVPNIRSIVEADYSYWT
LGYMMSLQGAKKLLKAEPLGKMLPVDEFLPVMFNKHPVSDYMEQFETRDLKAFSAEPLLV
FPTHYTGEPGYISDTETSTVWDNEGMRTDWDRKRSRKTHEQDEISTEAQNSDVLQSPLDS
TARDEL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgttcggggttgttttgtgtctgttgtgtttgctgaacattaccggcccggttctcggt
tactttccagaagagcgctggagtcctgaatctcctcttctggctccgagggtcgttatt
gctctcatctgccgaaattcggcccattccctgccttatttcctcggaaatattgagcgc
ttgaattatccgaaggaccgcattgcactttgggttgcgaccgatcataatgcagacaac
acgacgtatctgctccgagactggctcgtcagcgtccagaagctgtaccactacgtggag
tggagacctaaagaggagcccagtgcgtacggtgatgaggaaggacccaagcactggacg
aaccaccgatacgctcacgtgatgaagctgcgccaggctgcactggaagcagcccgagag
atgtgggctgactatttactggtggtcgactgtgacaatctcctgatcaaccgagatgtg
ttgtggaagctcatcagggagaataagaccatcgttgccccgatgctggagtctcgagcg
gcttattccaacttctggtgtgggatgacctctcagggttactataagcgcacgccggcg
tacataccgatacgcaagcaggtgaggaaaggctgcttccccgtgcccatggttcactcc
accttcctcatggatctgcgcaaagaagcgtccagactcctggcgtttcaccctccgcac
gccgactacagctgggccttcgacgacatcatagtgttcgccttctcagcccgaatggca
gaggtgcagatgttcgtgtgtaacaaagagacgtacgggtttttgcccgttcccctgcgt
tcccacaatacacttcaggacgaagccgacagcttccttcactctgtcctggaggtcaac
gtgcgatatccccccgtcgagccctccagttacctcccccctcccgtcagacagcccgat
aagctgggcttcgatgaggtgttcatgataaacctgcagcgtcggtccgatcggcgcgac
cgcatgctcagagcgctccgcatgcaggggatcgactgtaaggtcacggctgctgtcgac
ggcaaagccatgaacgtgagtgagatccagagtatggggatccacatgcttccaggctac
agcgacccctatcacggccggcctctgacgaaaggagagctgggctgcttcctgtctcac
tacaacatctggaaagagattgccgagcgtggcctgaagacctccctggtgatcgaagac
gatctgcggtttgagattttcttcaagcggcgcctgaagaacctgatgagcgaggtggag
agagaggggctcgactgggacctgatttacatcgggagaaagaggatgcaggtggaccat
ccggagaaagccgtgccaaatatacgcagcatcgtggaggcggactattcttattggacg
ctgggttacatgatgtcattacaaggagccaaaaagctgctgaaggcagaaccactgggc
aagatgctgcctgtggatgaatttcttcctgtcatgttcaataaacatcctgtctcagac
tacatggagcagttcgagacgcgagacctgaaggcgttctcggccgagcccctgctcgtc
ttccccactcactacacgggcgagcctggatacatcagcgacacggagacgtccacggtg
tgggacaacgaaggcatgcgcacagactgggacagaaaacgctcacggaaaacccacgag
caggacgagatcagcacggaggcgcagaactccgacgtgctgcagtctcctctggacagc
acggcgagggacgagctctga
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