Ictalurus punctatus (channel catfish): 108257576
Help
Entry
108257576 CDS
T04658
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04140
Autophagy - animal
ipu04148
Efferocytosis
ipu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108257576
04148 Efferocytosis
108257576
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108257576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108257576
Membrane trafficking [BR:
ipu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108257576
Hops complex
108257576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_16
zf-RING_Vps41
zf-C3HC4_2
zf-RING_11
zf-RING_UBOX
zf-C4H2
DUF2175
KNOX2
zf-ANAPC11
zf-RING_5
DUF5600
DUF1664
zf_RING_Vps8
zf-rbx1
DUF4446
LETM1_C
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
108257576
NCBI-ProteinID:
XP_017310953
Ensembl:
ENSIPUG00000018945
UniProt:
W5U6C4
LinkDB
All DBs
Position
25:17598431..17606599
Genome browser
AA seq
978 aa
AA seq
DB search
MATILDDYEDSQMIRHPVQSGRLPAANMIGITHSGFVNIRLEEEKPIFNKQRIDFSPPEK
INHFCVCNNQLCMSLGKDTLLRIDLGKPDQLNQIELGRKDDGKVHKLFLDPTGSHLVISL
STSECVYLNRNTQKVRGLSRWRGHLIESVGWNKILGNETNTGPILVGTGQGIIFEAEISA
SEGSLFNTNPDQYFRQVHSLEEDGKPAPVCCLDVERGIESKYFIIATTRKRLFQFVGKLA
EGSEQQGFSSIFAQNQDPSPSFQEFPVNMGYSEIGFYTSKLRSSPNSFAWMMGNGVFYGR
LDYSRPDSLLSDVQVWEYTPDIDFDYNKPISIVLTQFHFLLLLPDRVKAVCTLNEQVVYE
DVFPDKFGPLKKMIKDPVGGLVWIYTEKAVFRYHIQRESRDVWRMYMSMKKFDLAKEYCK
DRPECKDMVLAKEAEHWFQNKHYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLRK
LDNLKAKEKTQITLLVTWLTELYLNRLGQLEADVRKRAEFQETREEFRRFLCTNKHKECF
YNNRSTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYAAALDVLSKHCDEKLFY
KFSPVLMQHIPKKVVDAWIQMGNRLDPKQLIPALVNYSQIGSTQQIDETIRYMEFCVHEL
SVKEEAIHNYLLSLYAKYKPDSLLWYLEQAGTHASEIHYDLKYALRLCAEHGYHQACVLV
YRIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICVSLEEYNQHIEELKQEMEEATESARRIRQD
IQEMRNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLSAYKQSKLE
ELQKKLAAATQTTKSRHRPKEEDAVSLGKGQGSREQIKSDIDDIVASECAYCGELMIKSI
DKPFIDPHSFEEEMSSWL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcgactattctggatgattatgaagactctcagatgatcagacacccggtgcagtct
ggacgccttcctgcggccaacatgatcgggataacccactcaggattcgtgaacatcagg
ctggaggaagaaaagccgatcttcaacaagcagcggatcgacttctcgcctcccgaaaag
atcaatcacttctgcgtgtgcaacaaccagctgtgcatgagtctcgggaaggacactctg
ttgaggatcgatctggggaaaccggatcagctgaaccagatcgagctgggaaggaaggac
gacgggaaagtacacaaactcttcctggatcccacaggatctcacttggtgattagtctg
agcacgagcgagtgcgtctacttgaacagaaacactcagaaggtccgcggcctctctagg
tggaggggccacttgatcgagagcgtgggctggaacaagattttaggcaacgaaacaaac
accggcccgatccttgtcggaaccggccagggcatcatcttcgaggcagaaatctccgct
tccgagggttcccttttcaacaccaacccagaccagtacttcaggcaggtccattccttg
gaagaggacgggaagccggcgccggtctgctgcctggacgtggaacgtgggatagagtcg
aagtacttcattatcgccaccacacgcaaacgcctctttcagttcgtcggcaagttagcc
gagggttccgagcagcaaggcttcagctcaatctttgctcagaatcaggatccttcaccg
agctttcaggagtttcccgtgaacatgggctacagcgagataggcttctacacctccaag
ctccgttcaagcccgaactccttcgcctggatgatgggaaacggggttttttacggccgc
ttggactactcgcggcccgactctcttctcagcgacgtccaggtttgggaatacacaccg
gatatcgacttcgactataacaaacccatctccatcgtcctcacgcagtttcatttcctt
ctcctgctccccgatcgcgtcaaggccgtctgcaccttgaacgaacaagtcgtctacgaa
gacgtcttcccggataagttcggccccctcaaaaagatgatcaaagaccccgtcggcggc
ctggtgtggatctacaccgagaaagccgtcttccggtaccacatccagagggagtctaga
gacgtctggcggatgtacatgagcatgaagaagtttgacctggccaaagagtactgcaag
gatcgacccgagtgcaaggatatggtgctcgccaaggaggcggagcactggttccagaac
aaacactatctggagagcgccaagtgctacgctctgacgcagaactacttcgaagagatc
gcgttgaagttcatcgaagccaagcaggaggaggctctgaaggagttcctgctacgaaaa
ctcgacaacctcaaagccaaagagaagacccagatcacgctgctcgtcacctggttgacc
gagctgtacctcaaccgcctcggacaactggaggcggacgtccgaaagagggcggagttt
caggaaacgcgtgaggaattccgacgcttcctgtgtaccaacaagcacaaggagtgcttc
tacaacaaccggagcaccatctacgatctcttggcgagccacggcaacgtcgacgacatg
gtctacttttccgtcatcatgcaggactacgagagggtcatctctcaccactgccagcac
gacgactacgcggccgccctcgacgtcctctccaaacactgcgacgagaagctgttctac
aagttctccccggttctcatgcagcacattcccaagaaagtcgtggacgcctggatccaa
atgggcaaccggctcgatcccaagcagctgatcccggcgctggtgaactacagtcagatc
ggcagcacccagcagatcgacgagaccatccgttacatggagttctgcgtgcacgagctc
agcgtcaaggaagaagccatacacaattatctgctgtcactctacgccaagtacaagccg
gattcgttgctgtggtacctcgagcaggcgggaacgcacgcctcggagatccactacgac
ctgaaatacgccttgcgcctctgcgccgagcacggctatcaccaagcctgcgtgttggtc
tacaggataatggagctgtacgaagaagccgtggatttagctttgcaggtggatgtcgat
ttggccaagtcgtgcgcggacctccccgaggacgacgaggagctgaggaagaagctgtgg
ctgaaaatcgcccgtcacgtggttcaggaggagaaggacgtgaagaaggcgatgaactgt
ctgtccagctgcaacctgctgaagatcgaggacatcttgcctttcttcccggatttcgtc
accatcgaccacttcaaggaggccatctgcgtctcgctggaggagtacaaccagcacatc
gaggagctcaagcaggagatggaggaggccacggagagcgccaggcgcatccggcaggac
atccaggagatgaggaacaagtacggtgtggtggagtctcaggagaagtgcgccacctgt
gacttccccttactcaaccgacccttctatctcttcctgtgcggacacatgttccattac
gactgcctcttccaggaggtcacgccacacctctcggcgtacaagcagagcaagctggag
gaactgcagaagaagctcgctgctgccacgcagaccaccaagtctcgccacagacccaag
gaggaggacgcggtgagcctggggaaaggccagggcagccgagagcagatcaaatcggac
atcgacgacatcgtggcgtccgagtgcgcctactgcggcgagctgatgatcaaatccatc
gataagcctttcatcgacccgcacagcttcgaggaagaaatgtccagctggctctga
DBGET
integrated database retrieval system
