Ictalurus punctatus (channel catfish): 108257655
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Entry
108257655 CDS
T04658
Symbol
lrfn5b
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108257655 (lrfn5b)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
108257655 (lrfn5b)
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
Ig_3
I-set
LRR_4
ig
Ig_2
LRR_9
fn3
C2-set_2
V-set
Sp38
Ig_5
Motif
Other DBs
NCBI-GeneID:
108257655
NCBI-ProteinID:
XP_017311061
Ensembl:
ENSIPUG00000020167
UniProt:
A0A2D0PYE9
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All DBs
Position
25:5334295..5341034
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AA seq
791 aa
AA seq
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METLFVYLMVMIMAVKAQKIQICPKRCICQVLPPNLATLCDKKGLLFVPPDIDRHTVELR
LGDNFITTVKRKDFANMTKLVDLTLSRNTIGSITPHAFNDLENLRALHLDSNRLTRITND
TFSGMSKLHHLILNNNQLMYIHIGAFNDLLALEELDLSYNNLESAPWVAIQHMTSLHTLS
LDHNMIDYIPEGTFSGLMKLKRLDVTSNKLQKLPPDPVFQRAGVLATSGVLGPSSFALSF
GGNPLHCNCELLWLRRLRREDDLETCAAPQHLSGRYFWTVSEEEFLCEPPLITRHSQETR
ALEGQHVTLRCKARGDPDPVIHWIAPDGRLVSNSTRTVVHTDGTLDIVISTVKDSGSFTC
VASNPSGEAQQTVQLFIIKLPHFTNDTSLVQEPDPGSSDIATSTKSGGDGGTAISNTKAG
QEKRVLISEITSSSALVKFNLQRNIPGIRMFQIQYNGTYDDSLVYRMIPPTSKNILVNNL
AAGTSYDLCVLAIYDDALTTLTATRVVGCVHFTTEPQYLRCHFMQSQFLGGTIVVIIGGI
IVASVLSFIIFLIVRYRVCNQEGEDKGVELGEIRSQSRSEQLQVCGIIKSMSKQVLGVEM
DACRKVSPQLESVATLGTTSGPGPRPSKPALPDCTVTTSAASHSWHPASPNSQRPMHAAS
HKPAGVQKPDTQISVELDNTNKNNSAKVRPKSAQIRAYSTTVMPVSRRVQLDSSRYMTVP
VGCMRVSRRHSLNVDSCKQTSYGSLPQQTGSLRSKRSLSMSGGDLPQLDVSAKIHGKNSL
SRSEWVLESTL
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggagaccctatttgtttatctgatggtcatgatcatggcagtaaaagcccagaagatt
caaatatgtcccaaacgttgcatttgtcaagtgctgccacccaacttagccaccttatgt
gacaaaaaggggctgctttttgttcccccagacattgacagacacacagtagaactgcga
cttggtgacaattttatcacaactgtcaaaaggaaggactttgctaacatgaccaagctt
gtagacttgacactctccaggaacacaataggctctatcacacctcatgctttcaatgat
ctggagaacctgcgtgccctgcacttggacagcaaccgcctgacacgaatcacaaacgac
acctttagcggcatgtccaagctccatcatctcattctgaacaacaaccagctcatgtat
attcacataggagcctttaacgacctcctggcccttgaagagcttgatctctcctacaac
aatctagagagtgccccatgggtggccatccagcacatgactagcctgcataccttaagt
ctggaccacaacatgatagactatatacctgagggcacattttcaggcctcatgaagctc
aaacgtttggatgttacttccaacaagcttcagaagcttccacctgatccagtcttccag
cgtgcaggtgttctggccacatcaggcgttttgggtccatcatcatttgcgctgagcttt
ggggggaacccattacactgcaactgcgagttgctgtggttgaggagactacggcgtgag
gatgacctggagacttgtgctgctccacagcacctctcgggacgttacttctggacggtg
tctgaagaggagttcctgtgtgagcctccccttatcacacgtcattcccaggagacccgg
gcattggaaggccaacatgttactctgcgctgtaaagcacggggtgacccagatcctgta
attcactggattgcccctgacggtagactcgtatccaactcaacccgaacagtggtgcac
actgatgggacactagatatcgtcatcagcacagtgaaagattctggatcattcacatgc
gtggcatccaacccttctggagaagcacagcagactgttcagctatttatcatcaaactg
ccacatttcactaatgacacaagcttagtacaggagccagatcctggctcctcagatatc
gctacgtccaccaaatcaggtggagatggtggcactgccattagcaacaccaaagctggg
caggaaaaacgggtgctgatttctgaaattacatcctcctctgctctagtgaaatttaac
ttacaaaggaatataccagggattcggatgttccaaatccaatacaatggaacctatgat
gactcgctagtctacagaatgatccctcctaccagtaaaaacatcctggtgaacaacttg
gcggctgggacgtcgtatgacctctgtgtgcttgcaatctatgatgacgcattgaccact
ctcacagctacccgcgtggtggggtgtgttcactttacaacagaaccccagtacctccgg
tgccacttcatgcaatcacagttccttggaggtaccattgtagtcatcattggaggtatc
attgtggcctcagtcttgtctttcatcattttccttattgtacgttatcgagtgtgcaac
caggagggagaggacaagggagtagagctgggagaaattcgttctcagtccaggagcgag
cagctgcaggtctgtggaatcatcaagtccatgtccaagcaagttctgggtgtggagatg
gatgcgtgtcggaaggtttctccacagctggagtcagtggccacattaggaacgacgtct
gggcctgggcctcggccctctaaacctgcccttcctgactgcaccgttactacctctgct
gccagtcacagctggcatcctgcctcccccaactcccagcgtcccatgcatgctgcctca
cacaaacctgcaggcgttcaaaaaccagacacacagatcagtgtagaacttgacaatacc
aacaaaaacaactcagccaaggtgcgtcccaaatctgcccaaatacgagcctactccacc
acagtgatgccagtatccagaagggtacagctcgattcctcacgctacatgactgttcca
gtggggtgtatgagagtgagtcgcaggcattctctaaatgtagactcctgtaagcagacc
agctatgggagtctcccgcagcagactggcagccttcgctccaaacgcagtctgtccatg
agtggtggagatcttccccagctggacgtttcagccaaaatccatggaaaaaactcattg
tcaaggtcagaatgggttctagaaagcacactttaa
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