Ictalurus punctatus (channel catfish): 108257736
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Entry
108257736 CDS
T04658
Symbol
hnrnpub
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein Ub
KO
K12888
heterogeneous nuclear ribonucleoprotein U
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108257736 (hnrnpub)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108257736 (hnrnpub)
Spliceosome [BR:
ipu03041
]
Common components
Common spliceosomal components
hnRNP proteins
108257736 (hnrnpub)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
SPRY
SAP
AAA_17
Zeta_toxin
SRP54
6PF2K
AAA_18
Motif
Other DBs
NCBI-GeneID:
108257736
NCBI-ProteinID:
XP_017311199
Ensembl:
ENSIPUG00000007749
UniProt:
A0A2D0PYT1
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All DBs
Position
25:12830499..12840779
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AA seq
803 aa
AA seq
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MSSINVKKLKVNELKDELKKRQLSDKGLKAELMDRLQAALDAEAQAGDAALDAEDEEEEN
GAEGHAAEVEQECMAEELEEDEEPAGENMEAEEENGGGGVPESTQGNCEEDLGQDDEMAD
EEEEDGDAGIEIDKAFDDEEEDDDDAADKIDEEDGEQESQPTEGDADKDISADQKNKKGV
KRRREEHGRGYFEFIEESKYSRAKSPLPPLEEEDEEFDDTLVCLDPYNCDLHFKVSRDRY
SATSLTMESFAYLWAGGRASYGVSKGKVCIEMKILEKIPVKHVKSKNMDVHDVQIGWSLA
NGSLLLGEEEHSYSFAIKGKKTTNCVTEDYGEAFDENDVVGCLINFDGDEVEISYSKNGK
DLGVAFKASKEALAGRALFPHVLCHNCAVEFNFGQKETPYFPQPEGFTFLQQIAVDERVR
GPKGPETKKDCEVIVMVGLPGSGKTTWVTKHVEENPGKYTILGTNTIVEKMMINSLKRQN
KDTAKLTAISQSAPLFLGKFIEIAARKKRNYILDQTNVSAAAQRRKMCLFAGFQRKAVVL
LPTDEAYKERTQKKAETDGKDVPEHAVLKMKGIYTLPEVGDCFSEVTYVELQKEEATKLL
EQYKEESKSALPPEKKPNQGTPKKGGARSRGGKGQFNRGGGPPRGGRGGFQNRGNFRGMP
GPRGGFHRPPRGALPPPAFRGGYPSRGSFGRGAGGPPNRSMVPRGAPARGGMGGISNRGG
AMNRGKPMHRGNMNRGGGHGGGPSRGNFNQKFRGRGGNQQNRGGFGNRNGNFGMNKAQAF
NQSWQQGFWNQKPWSQQYHPGYY
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaattaacgtgaagaagctgaaggtgaacgagcttaaggatgagctgaaaaag
cgtcagctttcggacaagggcttgaaggccgagctcatggaccggttacaggccgcgctc
gatgccgaggcccaagctggagacgccgcgctcgatgcggaagatgaagaggaggaaaat
ggcgccgaggggcatgccgctgaggtcgaacaagaatgcatggccgaagagttggaggag
gacgaagagcctgcgggcgagaacatggaggccgaggaggaaaatggaggcggcggtgtg
ccggagagcacacagggcaactgcgaggaggaccttgggcaggacgacgaaatggccgac
gaagaggaggaagatggagacgccgggattgagatagacaaagcgttcgacgacgaggag
gaagacgacgacgacgccgctgacaaaatcgacgaagaagatggtgagcaagagtcgcag
ccgactgagggagatgcggacaaagacatcagtgctgatcagaagaataagaagggtgtt
aagagacgccgagaggaacatggaaggggctactttgaatttattgaagaaagcaaatac
agccgggccaaatctcccctgccacctctggaggaagaggatgaggagtttgatgatact
ctggtgtgtctggacccatacaactgtgacctacacttcaaagtgtcacgagaccgctac
agcgccacttcactcacaatggagagctttgcctacctttgggcaggtggccgagcttcc
tatggtgtgagcaaaggcaaagtctgcattgaaatgaagattcttgagaagatccctgtg
aagcatgtgaagagtaaaaacatggatgtccatgatgtgcagattggctggtccctggct
aatggcagtttactgctaggtgaggaggagcattcttattcattcgctatcaaggggaag
aagacgacaaattgtgtgactgaagactacggcgaggctttcgatgaaaatgatgttgtt
ggctgccttattaattttgatggggatgaagttgaaatttcatattctaagaatgggaag
gaccttggcgtggcattcaaagccagtaaagaggctctggctggacgtgctctattcccc
catgtcctctgccacaactgtgctgtggagtttaactttgggcagaaggagacgccgtat
tttcctcagccagagggcttcaccttcctccagcaaatcgctgtggatgagcgtgtgcgt
ggacccaaggggcctgagaccaagaaagactgcgaggttattgtcatggttggccttcct
ggatcagggaagaccacgtgggtgacaaaacatgtcgaggagaaccctggcaaatacaca
attctgggaactaacaccattgtggagaagatgatgattaacagtttgaagcgacagaac
aaagacacagcaaaactcactgccatctcccaaagtgcacctctcttccttggaaagttc
attgagattgctgcccgcaagaagaggaactacattttggatcagaccaacgtttctgct
gctgcccagaggaggaagatgtgcctatttgctggcttccagcgcaaagctgttgtgctc
ttgcccacagatgaggcttacaaggagcgcactcagaagaaagccgaaactgatggcaaa
gatgtccctgagcatgctgtgctaaagatgaagggcatatacacactgccagaagtgggc
gactgcttctcagaggtcacgtatgtggaactgcagaaggaggaggctaccaagctcttg
gagcaatacaaagaggagagcaagagtgccctacctccagagaagaagcctaaccaaggc
acacccaagaaaggtggtgctcgtagccgagggggcaaaggccagttcaacaggggtggt
ggccctccacgagggggcagaggaggtttccagaatcgtggcaatttcagaggaatgcct
ggtccccgtggaggcttccatcggccgccccgaggcgctctgccacctcctgcctttaga
ggtggctacccaagccgtggcagctttggccgaggtgctggaggaccccccaatagaagc
atggtgcctagaggagctcctgcaagaggtggcatgggtggcatctcgaacagaggtgga
gccatgaaccgtggaaagccaatgcacaggggcaacatgaaccgtgggggtggacacggt
ggtggacccagcaggggcaatttcaaccagaaattccgtggacgcggaggaaaccagcag
aatcgtggtggatttggcaacaggaatggaaactttggcatgaataaagcccaagccttc
aatcagagctggcagcaggggttctggaaccagaagccatggagtcagcagtaccaccca
ggatattactaa
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