Ictalurus punctatus (channel catfish): 108257926
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Entry
108257926 CDS
T04658
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108257926
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
108257926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
Importin_rep_4
Paf67
DUF5816
Motif
Other DBs
NCBI-GeneID:
108257926
NCBI-ProteinID:
XP_017311571
Ensembl:
ENSIPUG00000023529
UniProt:
A0A2D0Q1K9
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All DBs
Position
25:complement(1466538..1483892)
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AA seq
584 aa
AA seq
DB search
MDEEITDGYSEPCGQCGSVCWGVTNGGQFFCKNCHNVIERMKEVEDMSRFTVNSRISSLS
SSKRKREVKGRAREWMICEGFQLILKLQAEALVDLGVCPQLKTDVLWIFWKRYMQKTRQA
YTRNPVNILRGSAFTPQDQTSDTEVESSAAFSDASCHSETGSMMGASSVSGYSSDGRSSV
CSGSMDAECYFGQKDRKNLMTMPRTLAFCYLALLWVREAITLADLLRLVSKGHIPYVNAH
ALFPEDMKFFGKDAMIFRVESIPSYSNVHRDAASLAALIELPAFPPVTPDCLLHPALLTL
RYLMDANLPDKLHALVREVIQKTSMGTDSFLTFDPTERKPRLPCYDLQAAALIVVCMKLL
FRLDDNVEWKLAKKSDEKINEMDHGKSKTTKRGGKMFSLRKWFMVVQPALERARKKEQQA
TAMQQWKSETPIIPSLKHKTVVLKRRRVVEQLQSSFKALSGSAPEQQASTPSSFTFLWGD
EDGADGPSLHHRCLDYLMMNKKRIWHFVNRKYWHTDLRRCHKRQCGDHFGELEPTLPRMY
VWLLGLFSFMLGVEDAKLHGAVVQVEQGLLRKTGHKETPENLDE
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagataacggacggttacagtgaaccctgtggacagtgtggctcagtgtgt
tggggtgttacaaacggagggcagttcttctgtaaaaactgccacaatgttattgagagg
atgaaagaagttgaggatatgagcagatttaccgtcaacagcaggatctcctctttatca
tcaagcaaacggaagcgggaggtaaaaggacgtgcgcgagaatggatgatttgcgaaggc
tttcagttgatccttaaacttcaggccgaagcgttggttgatctgggcgtctgccctcag
ttgaagacggatgtgttatggattttctggaagcgatacatgcagaagaccaggcaggcg
tacacgagaaacccagtgaacattctcagaggttcagcgttcacgcctcaggaccagacc
agtgacaccgaggtcgagtcatccgccgctttcagcgacgcgtcatgtcactctgagact
ggctcgatgatgggagccagcagcgtctctggatactccagtgatgggagatcttcagtg
tgttcgggctccatggacgccgaatgctactttggacagaaagacaggaagaacctgatg
accatgccccgaacgctagctttctgctatctggctctgctttgggtccgggaggccatc
accctggcggacttgctcaggttggtgtctaagggccacatcccttatgtcaatgctcat
gcactttttcctgaagacatgaagttctttggcaaggatgccatgatctttagagttgag
tctatcccctcttacagtaatgtacacagggacgcggcgagtctggcggcactgatcgag
ctgcctgctttccctcctgtgactccggactgcctccttcatccagctctgctcacatta
cgctatttaatggatgctaaccttcccgacaagcttcatgcattagttcgtgaagtaata
cagaaaacatctatggggacagactcatttctgacctttgaccctactgagagaaagcct
agacttccgtgctatgatcttcaggccgcagcgctcattgttgtgtgcatgaagcttctg
ttcaggctggacgataatgtggagtggaagttggcaaagaaatcagatgaaaaaataaat
gaaatggaccacgggaagagcaagacaaccaagcgaggtggaaagatgtttagtctgagg
aaatggtttatggttgtacagcccgcactggaacgagccaggaaaaaagaacagcaggcg
acggccatgcaacagtggaaatctgagacgcccataataccgtctttgaaacataaaacc
gtcgtactaaaacggagacgtgtggttgagcagctacagagcagtttcaaagctctttct
ggctcagctccagaacagcaggcttccaccccatccagcttcaccttcctctggggagat
gaggatggagctgatggacccagtctgcaccacaggtgcctggactatctgatgatgaac
aagaaaagaatctggcactttgtcaaccgaaaatattggcacactgacttgaggagatgc
cataaacgtcagtgtggggaccatttcggtgagctggagcctactttgcccaggatgtac
gtgtggttgctgggactcttctctttcatgctgggtgtagaagatgcaaagctgcacggt
gcggtcgtccaggtcgaacaagggctactgagaaagacgggccacaaagaaacaccagaa
aacctcgacgaatga
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