Ictalurus punctatus (channel catfish): 108258040
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Entry
108258040 CDS
T04658
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04010
MAPK signaling pathway
ipu04020
Calcium signaling pathway
ipu04144
Endocytosis
ipu04510
Focal adhesion
ipu04540
Gap junction
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108258040
04020 Calcium signaling pathway
108258040
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108258040
09144 Cellular community - eukaryotes
04510 Focal adhesion
108258040
04540 Gap junction
108258040
09142 Cell motility
04810 Regulation of actin cytoskeleton
108258040
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ipu01001
]
108258040
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ipu04090
]
108258040
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
108258040
Protein kinases [BR:
ipu01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
108258040
CD molecules [BR:
ipu04090
]
Proteins
108258040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
V-set
Izumo-Ig
Kinase-like
Motif
Other DBs
NCBI-GeneID:
108258040
NCBI-ProteinID:
XP_017311769
Ensembl:
ENSIPUG00000010113
UniProt:
A0A2D0PZ57
LinkDB
All DBs
Position
25:complement(11512086..11533757)
Genome browser
AA seq
1462 aa
AA seq
DB search
MWILKTHLLLGVVLFGILQNVACELHHPFIVSDTNEFVLELHSMFNISCTGKKDVIWEEP
LPVNTHVLPGYYMTTLLIDGAEAHHTREYTCVYQSPDIEQANTEDIASIYIFVPDPQVPF
VPGDSTEVSRYNIPCRVTDPKSVVILRSLPSGVELPYHYEQKYGFLGYFPLGEYVCETVV
NGTTVPSVVYTVKDMSNMFNVPEKDFSVELTASQEEIKVGEAFNLTCTVPPGALYVQEWL
HLSKEAVGAIQKKETYPDKVLYILSIPHASTNDTGFYECSVTEQSSGKTHSSQVSIIVHE
GSFVILDHSGIGTIETIPFVEKAEFTIYIHSDGVPKVTWFKDDHVLNSNYIITTKTTLLG
DRRYESVLILRHPVEDDSGTYKITASLGSQRKEFSFKLYVEAGEPQITQPMLAPVIWPRN
KTMVVFLHSMFRLTCRGQAEVFWKGPVSLDKQKSDDKRGLFISTVTVDSATATHTGEYIC
LYKNENQTDKSSIYIFVPDPDMLFVPLPPYGHHVLKSPDEMEIPCRVSDPNAHVTLFHVE
TQQVLSTNYDSKKGFLGNFTPGTYVCQAIVDGEEHESDAYIVHGWTVGSGLHVELKAEKK
ALLVGETLIVNCVANGSDLLDQQWKYPGKMADRGKTTLKENKKDQEIYYTLTVPDARTKD
SGTYACSISDIMSNESQIKELTITVYEREFVSLDPMFGHVETAKLNDVQEFRVDIEAFPE
PKVTWWKDGVVLGDIAAEFTTSLQTINETRYQSTLTLIRAKAEDSGNYTVQAVIGNQAAS
YSFNLQVKVPAIIVDLLDLHHGSETGQAVVCIARGSPVPEVEWYICKNIKQCSNDSTEWS
PLQTNTTGITIDAHIDQDNQLESQVIFGHLENTLAVRCLARNEMVAVSREIKLVANGPHS
ELTVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVDPMQLPYD
TRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMS
ELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDSFLSRQAEKGKK
DLDIFGINPADESSRSYVILSFEEKGDYVDMKQADTMQYVPMLERSNASKYFDLQRDDYD
HPPSHKHINESEVEKLLSDDSERLTTMDLLSFTYQVARGMEFLASKNCVHRDLAARNVLL
SQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLW
EIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHASSDVYELMVKCWNNEPDKRPSFHSL
SESVATLLPCGYKRSYERVNNDFLKSDHPAVTRVQCVQSDETYLGVAYKNQCKMRERESG
FEEQRLSSDSGYIIPLPDLEPLSDEEYTKRNRHSSQTSEESAIETGSSSSTLPKREGETL
EDITLLDEMCLDSGDLVEDSFL
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgtggatactgaagacacatctccttttgggggttgtcctctttggaatattgcaaaat
gtggcgtgtgaattgcatcatcctttcatcgtttcggacacaaacgagttcgtgttagag
ctgcactccatgtttaacatcagctgcacagggaagaaagacgtcatctgggaagagcca
ctaccagtcaacacacacgtgctgcccgggtattacatgaccacactgctgattgacggt
gccgaggctcatcacaccagagagtacacgtgcgtttaccagagcccagatatagagcag
gcaaacacggaggacatagccagcatctacatttttgtcccagaccctcaagttccattc
gttcctggggattcgacggaggtctcccggtataacattccttgccgcgttacagatccc
aaatctgttgtgattctacggagtctaccaagtggagttgagctcccatatcactatgaa
cagaagtatggatttcttggctactttcctcttggcgagtacgtgtgtgagaccgttgtg
aatggtacaacggtccctagcgtggtgtacacagtgaaggacatgtcaaatatgtttaat
gtgccggagaaggatttcagtgtggaactgacagccagtcaggaggaaataaaagtggga
gaagcttttaacctgacctgcacggttccacctggcgctctctatgtccaggagtggttg
catctcagtaaagaggctgtaggtgctattcagaagaaggagacctaccctgataaggtt
ttatatatcctcagtatcccacatgcctcaacgaatgacactggcttctacgaatgctca
gtcacagagcagtccagcggcaagacccactcctcccaagtatccatcattgtccatgag
ggttcttttgttattctggatcacagtgggattggaacaatagaaaccatccctttcgtg
gagaaggctgaattcaccatttacattcattctgatggtgttcccaaggtcacgtggttc
aaagatgaccatgtattgaatagtaattatataataacaaccaagaccactcttctagga
gacagaaggtacgagagtgttttaattctgcgacaccctgtagaagatgacagtggaaca
tataagattacagcgtcactcggctcacagagaaaagagttttccttcaaactctatgtt
gaagctggtgagccccagataacacagcccatgcttgctccggtaatctggcccaggaac
aagaccatggtggtgttccttcactccatgtttagactgacatgtcgcggccaagcagaa
gtgttctggaaaggtcccgtctcccttgacaagcagaagtcggatgacaagagaggcctg
ttcatttccacggtgactgtggacagtgctactgcaacacacaccggagaatacatctgt
ttgtacaagaatgagaatcagactgacaagagcagcatctacatctttgtgccagatccg
gacatgctgttcgtgcccctgccgccctatgggcaccatgtgctaaagagcccagatgag
atggagattccatgccgcgtgtctgatccgaatgctcatgtgacgctgttccatgttgag
actcagcaggttctgtccaccaactatgacagcaagaagggttttctaggcaacttcaca
cctgggacatatgtgtgtcaggccattgtggatggagaagagcatgagagcgacgcgtac
attgtccatggctggacagtgggctcagggctgcacgtagagcttaaggcagagaagaag
gctctgctggttggggaaaccctcattgtaaactgtgtagccaatggcagtgacttgcta
gatcaacaatggaagtatcctggaaaaatggcggatcgtggtaagacgacactaaaggag
aacaaaaaagatcaggagatctattacaccctgactgtgcccgatgctagaactaaagac
agtggaacttatgcctgttccatcagtgacattatgagcaatgagagccaaatcaaagag
ctcaccattactgtctatgagagggagtttgtatctctagatccaatgtttggccatgtg
gagacagccaaactgaacgatgttcaggagttccgggtggacattgaggcttttcctgaa
cctaaggtcacgtggtggaaggatggcgttgtattgggtgatattgctgcagagtttact
acctcccttcagacgatcaacgagacaaggtaccagagcactctcactctgattagagct
aaggctgaggacagtggcaattacacggtgcaagctgtgataggcaaccaggctgcaagc
tactcgttcaaccttcaggtgaaagttcctgctataatcgtggacctgctagacctgcac
catggctcagaaacaggccaggctgtggtgtgtatagccagaggatctcccgtccctgag
gtggagtggtacatctgtaaaaacattaaacagtgttccaatgactcaaccgagtggtca
cctcttcagaccaacaccactggcatcaccattgatgcacacatagaccaggacaaccag
ttggagagtcaggtgatctttggacatctggagaacacgctggctgtgcgctgcctggca
cggaacgagatggtcgctgtgtcccgtgagatcaaactggtggccaatggtccgcactca
gagctcactgtggcggctgctgttctggtgctgttggttattgtcatcatctccctcatt
gtgctggtcattatctggaaacagaagccacgttatgagatcaggtggcgggtcattgag
tcagtgagtccagatgggcacgagtatatctatgtggatcccatgcagctgccctacgac
acacgctgggaattcccacgtgatggccttgtccttggccgtattctgggctcaggggcc
tttgggaaggtggtggaaggcactgcgtatggactcagtcgttctcagccagtaatgaag
gtcgcagtgaagatgctcaaaccaacggctcgctccagtgagaaacaagcactgatgtca
gagctgaagatcatgactcacctgggcccccacctcaacattgtcaacctgctcggtgca
tgcaccaaatcaggtcctatctacatcattaccgagtactgtttttatggagacctggtg
aactacctgcataagaacagagacagcttcctgagccgacaggctgagaagggcaagaag
gacctggacatctttggcatcaatccagctgatgagagcagcagaagttatgtgatcctg
tcgtttgaggaaaaaggagactacgtggatatgaagcaggcagacacaatgcagtatgtc
cccatgttggagaggagcaacgcctccaaatacttcgaccttcagagagatgactatgat
caccctccctctcacaaacacatcaacgaaagtgaggtagaaaagcttctctctgatgac
tcagagcgcttgaccacaatggatcttcttagcttcacctatcaagtggccagagggatg
gagttcctggcctccaaaaattgtgttcacagagatttggcagctcgaaatgttctgctg
tctcaggggaagattgtgaagatctgtgactttgggctggccagggacatcatgcacgac
aacaactatgtgtccaaaggaagtaccttcctgccagtaaaatggatggcccctgagagc
atctttgataacctgtacaccactctgagtgatgtctggtcttacggcattttattgtgg
gagatcttttctctgggcgggaccccttatcctggcatggttgtggactccagcttctat
aacaaaatcaagagtggctacaggatggccaaacctgaacacgcttccagtgatgtttat
gagctgatggtgaagtgctggaacaatgagccagataagagaccctctttccacagtctg
agtgagagtgtggccaccctgctgccctgcggatacaagaggagctatgagcgtgtaaat
aacgacttcctgaagagcgaccacccggcggtgacccgcgtgcagtgtgtgcagagcgat
gagacctatttgggtgtggcctataagaaccagtgcaagatgagagagcgtgaaagcggc
ttcgaggagcagagactgagctcagacagtggctacatcatccctctgcctgaccttgaa
cccctttccgacgaagaatacaccaaaaggaaccgtcacagctctcagacatctgaggag
agcgctatagagaccggctcgagcagctccaccctgcccaagcgggagggagagaccctg
gaggacattacgctgctggatgagatgtgcctggactcgggagatctggtggaggacagc
ttcctgtga
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