Ictalurus punctatus (channel catfish): 108258046
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Entry
108258046 CDS
T04658
Name
(RefSeq) poly(A) polymerase alpha
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108258046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108258046
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
108258046
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
108258046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
DUF6431
Motif
Other DBs
NCBI-GeneID:
108258046
NCBI-ProteinID:
XP_017311793
Ensembl:
ENSIPUG00000005919
UniProt:
A0A2D0PZ78
LinkDB
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Position
25:14001650..14024106
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AA seq
782 aa
AA seq
DB search
MPFPIMSQAQPAQDTPKHYGITSPISMALPKESDLVQTQKLVQALKPFGVFEEELELQRR
ILVLGKLNTLVKEWIQDISTSKNIPPSLIENIGGKIFTFGSYRLGVHTKGADIDALCVAP
RHVDRSDFFTSFYEKLKEQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEN
LDLRDDNLLRNLDIRCIRSLNGCRVTDEILHLVPNIENFRLTLRAIKLWAKRHNIYSNIL
GFLGGVSWAMLVARTCQLYPNAVASTLVYKFFLVFSKWEWPNPVLLKQPVECNLSLPVWD
PRVTPSDRYHLMPIITPAYPQQNSTYNVSVSTRNVMIEEFKQGLAIVDEILQNKADWSKL
FEAPNFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSF
PGPKESNKTPEFSTMWVIGIGFRKMEGSEHLNVDLTYDIQSFTDTVYRQAISSKMFETDM
KITAMHVKRKQLHQLLPDLVIPKRRKHSTEGLRAVNEGSVDLSLDSDNSMSMPSPTGTSS
SARTSFSASPHRSTGTTASSDSQGKTDTSGGVNPTAACLTEPKTSSGSSPPQERRRPGSP
LHDENSKNLQLQEHSTANEGCVDMSMDRDNSMSMPSPPKTSFSASPHRSTGTSASSDSQG
KMDTSVSTGPAAACPSDMKIPSPASAGKRPSSPLNDEQAKKLRLEEDSTSESADQAAEFS
QASDFTSLDGEVKMETEAAESDAEGKIPPSRKTSSTDLSDVPLPPANPIQVVKNSIKLRL
NR
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgccttttccaattatgagtcaggcgcaaccggcccaggacaccccaaagcattatggg
atcacgtcgcccatcagcatggctctgccgaaagagtcggacctggtgcagacgcagaaa
ctggtgcaggcgctgaagcctttcggtgtgtttgaggaggagctggagctgcagcggaga
atcctggttttggggaaactgaacacgctggtcaaggagtggatccaggatatcagcacg
tccaagaatatacctccatcattgatcgaaaatattggtggaaaaatatttacattcggg
tcctacaggttaggagttcacacaaaaggtgctgatatagacgctctgtgtgtcgcccct
cgacatgtggataggtccgacttcttcacctctttttacgagaagttaaaagagcaagag
gaggtcaaagacttaagggctgtcgaagaggcgttcgtccctgtgattaaactgtgcttc
gatggcattgagattgatatcctgtttgctcggttagcgctgcagaccattccagagaac
ctagacctgcgggacgataatttactgaggaacctggatatccgatgtattaggagtctg
aacggttgcagggtgacggatgagattctccacctggtgcccaacattgagaatttcaga
ctcactcttagggccatcaaactgtgggctaaacgccacaacatatattcgaacatcttg
ggtttcttgggcggcgtgtcgtgggcgatgctggtggcgagaacgtgtcagctttacccc
aacgctgtggcttcaaccctcgtgtacaagttcttcctagtgttttctaagtgggagtgg
cctaatccagtccttttgaagcaaccagtggagtgcaacctcagcctgccagtgtgggac
ccaagggtaaccccgagtgaccggtaccacctcatgcccataatcacaccagcttatcct
cagcaaaactctacctacaatgtgtccgtgtccaccaggaatgtcatgatcgaagagttc
aaacagggtctggccatcgtggatgaaatactgcagaacaaagcagactggtccaaacta
ttcgaagctccaaacttctttcagaaatacaagcattatattgtgttgctagcaagtgcg
cccactgagaagcagcacctcgagtgggtcggcctcgtcgagtctaagatccgaatcctg
gtgggaagcctggagaaaaatgagttcatcactctcgcacatgtgaatccacagtcgttc
ccaggacccaaggagagcaataaaacgccagagttcagtacaatgtgggtcattggtatc
gggttcaggaaaatggaggggtctgaacatcttaacgtcgacttgacatacgatatacag
tcattcacagacacggtgtaccgtcaggccattagcagcaagatgtttgagactgacatg
aaaataacggcgatgcacgtgaagaggaagcagcttcaccagctcctgccagaccttgtt
atcccaaaaaggagaaagcattcgactgaaggcctgcgtgctgtgaatgagggcagtgtg
gacttgtctctggacagtgataacagcatgtccatgccctcacccaccggtacctccagc
tctgccaggacttccttctctgccagtcctcaccgctccacagggaccactgccagctca
gattctcaggggaagacggacacctcgggaggcgtgaatcctactgcagcgtgtctgaca
gagccgaagacctccagcgggagcagtcctcctcaggaacggaggagaccgggctcaccc
ctccatgatgagaactccaagaatctccaattgcaggagcattcgactgcgaatgagggc
tgtgtggacatgtccatggacagagataacagcatgtccatgccctcgccccccaagaca
tccttctctgccagtcctcatcgctccacagggaccagtgccagctcagattctcaagga
aagatggacacgtcagtaagtacgggtcctgctgcagcttgtccttcagatatgaaaatc
cccagtcctgctagtgcagggaagagaccgagctcaccgctgaatgatgagcaggccaag
aagctcagattagaggaggattctacctcagaatccgcggaccaggctgctgaattttct
caggctagcgatttcacctctttagacggagaggtgaaaatggagaccgaggcagcggag
tcggatgcagaagggaagataccaccgtctcggaaaacgtccagcactgatctatctgat
gttcctcttcctccggctaaccccatccaagtggtgaaaaactccataaagctgagactg
aatagatag
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