Ictalurus punctatus (channel catfish): 108258103
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Entry
108258103 CDS
T04658
Symbol
yy1b
Name
(RefSeq) transcriptional repressor protein YY1b isoform X1
KO
K09201
transcription factor YY
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
ipu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108258103 (yy1b)
03083 Polycomb repressive complex
108258103 (yy1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108258103 (yy1b)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108258103 (yy1b)
03029 Mitochondrial biogenesis [BR:
ipu03029
]
108258103 (yy1b)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108258103 (yy1b)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
108258103 (yy1b)
Mitochondrial biogenesis [BR:
ipu03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Ubiquitas transcription factors
108258103 (yy1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
C2H2_ASCIZ
TFIIIA_zf-C2H2
Raffinose_syn
zf-C2H2_ZN142
IBR
Motif
Other DBs
NCBI-GeneID:
108258103
NCBI-ProteinID:
XP_017311974
Ensembl:
ENSIPUG00000020149
UniProt:
A0A2D0Q100
LinkDB
All DBs
Position
25:complement(5349926..5362700)
Genome browser
AA seq
389 aa
AA seq
DB search
MCVYMQAGKLAEFNMASGETLYIETDGSEMPAEIVELHEIEVETIPVETIETTVVGGDDD
DEHQPMIALQPLVTDDPNQVHHQEVILVQTREEVVGGDESDLRTDDGFEDQILIPVPAPG
SEEEYIGQTLVTVAGKSSMGRMKKGGSGGKKAGKKTYLSAGEATGRKWEQKQVQIKTLEG
EFSVTMWASDDKKDIDHETVVEEQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLA
EFASNNSGSLGRTSVRMKPRKVKEDDAPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVH
VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC
PFDGCNKKFAQSTNLKSHILTHAKAKNNQ
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtgtatatgcaagcaggcaagctggcggaattcaacatggcatccggggaaacg
ctgtatatcgagacagacggctcggagatgccggctgaaatagtggaacttcatgaaata
gaagtggagactattccggtggaaacgatcgagaccacagtggtcgggggcgacgatgat
gacgagcaccagcccatgatcgcgctgcagccgctcgtaacagacgacccaaatcaggtc
caccatcaggaggtgatcctggtgcagacccgggaggaggtagtcggcggggacgagtct
gatctgcggacagacgatgggtttgaggaccagatcctcatcccggtgcccgctcccggg
tcagaggaggagtacatcgggcagactctggtcacggtagctgggaagagttccatgggc
cggatgaagaaggggggaagcggtggaaagaaagcgggtaaaaagacctacctgagcgcc
ggagaagccactgggagaaaatgggagcaaaaacaggtgcagataaagactctggaagga
gaattctccgtgacgatgtgggcgtcggatgataaaaaggacattgaccatgaaacagtg
gtggaggagcagattattggagagaattctcctccagattactctgaatacatgactgga
aaaaagcttcctcccggtggcatcccgggcatcgacctctctgaccccaaacagctcgcg
gaatttgccagtaacaatagcggctctttgggtcgcacttcagtacgaatgaaaccgcga
aaggtcaaagaggatgatgcacccagaacgatagcctgtccccacaaagggtgcaccaag
atgttcagggataactctgcaatgaggaagcacctccatacccacgggccccgggttcat
gtgtgcgcagagtgcgggaaagcctttgtagagagttcaaaactaaagcgccaccaactt
gttcacaccggagaaaaacctttccagtgcactttcgagggctgcgggaaacgcttctcc
ctggactttaacctccgcacgcatgtacgaattcacactggagaccgcccatatgtctgt
cctttcgatggctgcaataagaagtttgctcagtctaccaatctcaagtcgcacatccta
acacatgcaaaagccaaaaacaaccaatga
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