Ictalurus punctatus (channel catfish): 108258285
Help
Entry
108258285 CDS
T04658
Symbol
sorcs3
Name
(RefSeq) VPS10 domain-containing receptor SorCS3
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108258285 (sorcs3)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Others
Others
108258285 (sorcs3)
Endosome - Lysosome transport
108258285 (sorcs3)
Endosome - Golgi transport
108258285 (sorcs3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
DUF443
Motif
Other DBs
NCBI-GeneID:
108258285
NCBI-ProteinID:
XP_047007129
Ensembl:
ENSIPUG00000015492
UniProt:
A0A979EHZ6
LinkDB
All DBs
Position
26:complement(11425069..11721277)
Genome browser
AA seq
1222 aa
AA seq
DB search
MDSLSGMYLTLCTWLVCSLHICARAEVTCASCPFPALVKIGDVQNNARIIIPTAARKSLL
NFARTRLQPVLEGVHELGKDASASGVPNSREVEVAARSLEPGSGEKTLPKQTTLGEQREY
EKVCKKDGALRRRKRSAAQLDEFGASARSGDSAESSDALLFVDGQKLRRNRDEGKVATSR
SEEPKVSSSTFALAGDSAHNHAVVYWTGQNSSVILILTKLYDFHLGSVTESSLWRSTDYG
TTYERLNDKVGVKTVLSYLYICPTNQRKVMVLTDPEFESSILISSDEGASYQKYRLSFYI
LSLLFHPSQEDWALAYSHDQKLYSSFDFGRKWHLVHERVTPNRFYWSVSGLDKEADLVHM
EAYTSDGHCQYMTCRAQACFESSRTFPFPGYIEPNSLVVQDDYIVIQVTMSGRATYYVSY
QRGPFARIKIPKYSLPKDMHILSTDQGQVFAAVQEWNQNDTYNLYISDPHGVYFTLALEN
VKTTRGLGGNSMIDLYEVAGIKGMLIANRKLENQVKTYITYNKGRDWRLLQAPTTDLEGN
EIYCVQPFCSLHLQLQMSENPYVSGSITTKNSVPGVIIAIGNMGSELSYNNVGMFMSSDA
GNTWRQIFDEEHNVWFLDKAGALLAVKQPTVPTRHFWISFDEGRQWTHHIFSAMPLFVDG
VLVEPGMENQILTFFGHFSDRSEWQLIKINYKSLFTKRCTEGDYQTWHLHNQGEPCVMGQ
KQIFIKRRPGNYCMMGKDTRILSAEPCICRAHDFECDYGYERRGDGNCLPAFWFNPSTVS
RSCSQGQNYFNSTGYRKVAANNCTKGVKEMYTARKQQCPNRPPRGLHLATRDNTLKANMG
SNVTFIVQLEEGDSMRTNIQLDFGDGTAVSYSNLSWTEEGIRHVYRSTGIFRVTAIAENS
LGSDSSSLYLHVTCPVEHVQLLAPFVVIKHKDVNLTAVVWPSHSRTLTYFWWLGNNTEPM
ITLEGSISYVFPVEGTYTVTVQVSSSNSILQDTKQIVVQEFFKSLLLSFSPNLDEANPDI
PEWRHDVGRIIKKAVLQIADIPAEQLLVAIFPGLPTAAELFLLPSKNQSDSRKGSEDDLE
QISEILTNALNQNLVEFELKPGSGVIVYITQLTLAPLVDSIPRHSSSAMLMLLSVVILGL
AIFLIYKFKRKIPWINIYAEVNQEKEQEMIGTVGQNDTTPKIKLSEFSSPKELMEKDLEV
RVKRGMINACESTREIPNCTSV
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggactcgttatctggcatgtacttgactctgtgcacttggcttgtttgctctttgcat
atttgtgccagagcggaggtaacttgcgcctcgtgcccgttcccagcgcttgtgaaaatt
ggggacgtccaaaacaatgcacgcatcatcattcctacagcggctaggaaatcacttctc
aatttcgcacgcacgagattgcaaccggttctggaaggagttcatgagttggggaaagac
gcgagcgcgagcggcgtgccaaactcgagagaagtggaagtggcggcgcgctcactcgaa
cctggctccggtgaaaaaacactgcccaagcaaactacactgggggaacagcgggaatat
gagaaagtgtgtaaaaaagacggtgcgttacggagacgcaaaaggagcgcggcgcaactg
gatgaatttggcgcaagcgcgcggagcggagattccgcagagtcctcagatgctctgctg
tttgtggatggacagaaactgcgacgcaaccgagacgagggaaaagtggccacttccagg
tcggaggaacccaaagtgagcagtagcactttcgccctggctggagactccgctcacaac
cacgctgtcgtttactggaccggacaaaacagcagcgtgattctgatcctgaccaagctt
tatgacttccacttgggcagtgtcactgaaagctccctatggagatcgacagactatggc
accacctatgagagactgaatgacaaagtgggagtgaagacagtcctgagttacctgtac
atctgtcccaccaaccaaagaaaggtaatggtgttgacagacccagagttcgaaagcagc
atcctcatcagctccgatgaaggggccagttaccagaaataccgtctcagtttctacata
ttgagtctgctttttcacccttcacaagaggattgggctctggcctacagtcatgaccag
aagctgtacagctcgtttgactttggacggaagtggcatctcgttcacgagcgagtgacc
cccaaccgcttctattggtctgtaagtggtctggataaggaagccgatctggtgcacatg
gaggcgtacacttctgatggacattgtcagtatatgacatgcagggctcaggcttgtttt
gaatcaagtaggacgttcccattccccggctacatcgagccaaattcgctggtggttcag
gatgactacatcgtcattcaggtcaccatgtctgggagagccacttattatgtgtcttac
caaaggggaccttttgcacgcatcaaaatacctaaatactctcttccaaaagacatgcac
atcctgagcacagatcaaggtcaggtttttgccgctgtgcaagagtggaaccagaacgat
acgtacaacctgtacatctcagatccgcatggtgtttacttcactctggctttggaaaat
gtcaagaccacccgcggtcttgggggcaacagtatgatagacctgtatgaggtagcggga
atcaaaggcatgctgattgctaatagaaaactggagaaccaggtgaagacgtacatcact
tacaacaagggccgggactggaggctgctgcaggcgcccaccacagacctggagggtaac
gagatttactgtgtgcagccattttgttcgctacacctacagctgcagatgtcagaaaac
ccttatgtctctggaagtattaccaccaagaactctgtgccaggagtaatcatcgctata
ggcaatatgggctctgagctctcctacaataatgtaggaatgttcatgtcatcagatgct
ggcaatacctggagacagatatttgatgaggagcacaatgtttggttcctggataaagca
ggagctctacttgcagtcaagcagcccacagttcccacaaggcatttctggatcagcttt
gatgaagggagacagtggacacatcatattttctcagccatgcctctgtttgtggatggt
gttctggtcgagccaggcatggagaatcagatcctgacgttttttggacacttcagcgat
cgctctgagtggcagctgatcaaaatcaactacaagtccctgtttaccaagcgctgcact
gaaggagactaccaaacgtggcacttgcacaatcagggtgagccatgtgtaatgggccaa
aagcagatcttcatcaagcgccgcccgggcaactactgcatgatgggaaaggacaccagg
atcttatcggctgaaccttgtatctgtagagcacatgattttgagtgtgattacggctat
gagcgaagaggagatggtaactgcctgcctgcattctggttcaatccttccactgtatca
cggagctgcagtcaaggccagaactatttcaacagcacaggttatcgcaaagtagcagca
aacaactgcaccaaaggggtgaaggagatgtacacagcgaggaaacagcagtgtcccaat
cgacccccacgaggattgcacctggcaacccgtgacaacaccctcaaagcaaatatgggc
tccaatgtcacctttatagtacaactggaagagggagactcgatgaggacgaatatccag
ttagacttcggggatgggacggctgtgtcctattctaacctcagctggacggaagagggt
atcagacatgtgtaccgcagcacaggaatcttccgggtcactgccatcgccgagaacagc
ctgggatctgactcaagctccctctacctgcatgtgacatgtcctgttgagcatgtccag
ttgttggctccatttgtggtcattaagcacaaggacgtgaacttgactgcagtggtctgg
ccctctcactctcgaactctcacttacttctggtggctggggaacaacacagagccaatg
atcactctagagggcagtatatcctacgtgtttccagtggaggggacgtacacggtaacg
gtgcaggtctcatcatccaactccattcttcaagacactaaacaaatcgttgtgcaagaa
ttctttaaatccctgcttttatctttttctccgaatctggatgaggccaaccctgacatc
ccggagtggaggcacgatgtaggcaggataattaaaaaggctgtgctccaaatagccgat
attcctgccgagcagctcctggtggcgattttccctggactaccaacagctgctgagctt
ttcctgcttcccagcaagaaccagtcagacagcaggaaagggagcgaagatgatctggag
cagatctcagaaatcctcaccaatgcattgaaccagaatctggtggaatttgagctgaaa
ccaggatctggagttatcgtttacatcacacagctaacattagctccgctggtggactca
atccctagacacagcagttctgccatgctgatgctcctctctgtggtaatcttggggtta
gccatcttcctcatttacaaattcaagagaaaaattccctggataaatatatacgctgag
gtgaaccaagagaaagagcaggagatgatcggcacagtgggtcagaatgacacgacaccc
aaaattaagctaagcgagttctccagccccaaagagcttatggagaaggatttggaagtc
cgtgttaaacgtggaatgatcaatgcctgtgaaagcacaagagagattcccaactgtaca
agtgtctga
DBGET
integrated database retrieval system
