Ictalurus punctatus (channel catfish): 108258461
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Entry
108258461 CDS
T04658
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108258461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108258461
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108258461
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
108258461
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
108258461
NCBI-ProteinID:
XP_017312604
Ensembl:
ENSIPUG00000007685
UniProt:
A0A2D0Q2S3
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All DBs
Position
26:complement(18343538..18349905)
Genome browser
AA seq
194 aa
AA seq
DB search
MSPMKLCVPGERLCSVEDCTPGAGTYLRHGSVFASLAGYVLRRNEGEELPVISVVKETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGVQMVPISWCEMQCPRTHNKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgaaaggctttgcagcgtggaggactgcacc
cctggcgcgggcacgtatctgcggcacggctccgttttcgcctcgctggccggctacgtg
ctgagaaggaacgaaggcgaggagctgccggtgatctcggtagttaaagagaccgaagca
cagcttttgcctgacgtcggagccatcgtcacctgtaaggtgacgagcatcaacccacgg
tttgcgaaagtgcacatcctctacgtgggatctacgcctctgaaggaccggttcagaggc
accatcaggaaagaagatgtgagagcaacagagaaagacaaagtggagacgtataagagt
ttcaggcccggtgacatcgtcctcgccaaagtgatctcgttgggcgacgtgcagtcgaac
tacctgctgaccacggcggagaacgaactgggcgtggtcgtggcccacagtgaggcaggg
gtacagatggttcccatcagctggtgtgagatgcagtgtcctcgaacgcacaataaagag
tttcgcaaggtggcgagagtgcagccggagtacctgcaggcgtga
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integrated database retrieval system
