Ictalurus punctatus (channel catfish): 108258481
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Entry
108258481 CDS
T04658
Name
(RefSeq) zinc finger CCCH domain-containing protein 13 isoform X2
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108258481
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
108258481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_DUS3L
zf-CCCH_4
zf-CCCH_2
zf-CCCH_PAN3
Motif
Other DBs
NCBI-GeneID:
108258481
NCBI-ProteinID:
XP_017312624
Ensembl:
ENSIPUG00000021878
UniProt:
A0A2D0Q2U0
LinkDB
All DBs
Position
26:13946004..13964399
Genome browser
AA seq
1749 aa
AA seq
DB search
MSKIRRKVTVENSKTISESSSSTTTPSRRPSVFERLGPSTGSNATETQCRNWLKTGNCSY
GNTCRYTHGTPARGKNFSGAFSRSSERPTGDLRERMKNKRQDVDTDTQKRDQDEPTSPTT
RQRDSSRSRHREKEDIKITKERTPASEEEAAEWEANREDSDNGDYDYELSLEMKRQKIQN
ELMKLEQENMDKREELLIKKEESVTKTRTSSTSKDKGSPEHASSKNSPLSRKSSGSPKRK
PSGSPKRKSIGKGSGSGKKEKKSSSSSVISSPVMEQSRTEEAESRSSKSGHSKKKGPRTP
SPPPPVPLDLPVGGKKHKGKHKNKEKSEDKQKEAKERGRDIDKHKEKKEKRRDRSDSSHK
AKRSVTSEERSGSVSSPGREVSPQTRRKSSSPKSTTQKQSSPQRSRTPPRHRRSLSPTPR
PHHSPSSHSGSSHQRHSPSPRRRRGSASPSYQRDLLPPLSSSPTAAQASRRSRSRSPPTP
QRSSPASRHHSQGREREKERGRGERDRSPTHDRRHERRDESRGKREKDGGRDDRSYEADQ
SSSRDDRETRESRDRRFDRDRRDTRDDRQHRSGDAKDVRDTRDRSGRESMEHRDRDRDRE
RDRERDRDRDRNDAHRKDDTSVQEERSYGRGHGREEGRSESRAESRNESRTERTGRGRGR
ASDNSEKGSARGSRASTSQADSGGHDGWESRSGGLSERSSERNTEKGTERDRYDGDRQRG
EQARDSSYDRRGSQADRDRREHRDRDQRAPSPGRHQGRGEETEREERRDERRSDRGEDRR
EDRGRERDRERDREREREREREKERERETERERAREREREREEREREREREREREREERE
REREREERERERKERERERELRERERQREWEEREKGREDRRERREERGDPHEERKNSGRK
RHRVENTPSPRPSPKKVREGSPADSDGYNSTEEKGDKHRLLSQVVRPQEPSRSPPRVVSA
DDKPTRWRDNERRGDKKDGRGRHEEAEPRRERSAGRGTERRGDHSSESSLTVPASESRRI
KEQRDAIAPPVPSASGPEVRDSASAGHEEGKKKTKSQKKNLKKNRKEDESISAGGDRFNP
EPLPPPSSSSSSVPTEAPRPLLSSPKVVKKKSLEQRRKRSRGAESDPSEDEQPISKRRRG
PQTPPPINKEDLPSQRALLSGHAIATPLKIDTNFSDWSDEEVPERSDALPERAPERLLPR
RNPPLAPLLPDPPMALHALPLQPLQPLLPQHMLRKPQQADQRQQRSSSMGSNQSWAASRR
LRSPSNDSAHRTDDSQPGPRSRRAHGQGANSRDRDRERERERERDRTAATELIGGREERK
SRIDQLRRGEPSRSTSSDRQDSRSHSSRRSSPESERQARSRAGSHDSRERDRDRERDQFE
RDRKEYRQPQNQSLLQPRDWEPEPREWGVRGREPLLLRPNREPIRERDLREMRERERLLP
EGPLSHERLDRDRERDRDRGERERERMLPFDHPPSGEPKSRAEMRMERGDYEPLLPREAL
MDMDKPSATEEPHVPVEPCETEKIDSLDVEDEGKGEDVQSAVSGGEEYEPISDDELDEIL
ADSQKRDDQQDEEKIPGPLDVIDVDWSSLMPKQKQETRAPGAALLRFTPGAMLLRAGVSR
RLAGPQLLARVKDVCAKELEDAKDAEKLFEHDLGALNMAALNRRTERANLLRNLGPCGKA
LCARRDIAIRRQLLKNDKGTTKQIYTSAPVVDQELLQLSIRLFKKKMAAGQEKADPAPVA
GTPAEVCVS
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagatcaggcggaaggtgacagtggaaaactcgaagaccatatcagagagcagc
agcagtacgaccactccatcccgcaggcccagcgtcttcgagagactcggacccagcacg
ggcagtaatgccacagagacccagtgtagaaattggttgaagacaggaaattgcagttac
ggcaacacttgtcgctacacgcatggaactccggcaagaggcaagaatttttctggcgca
ttcagcaggtcatccgagaggcccactggtgatctccgggagaggatgaaaaataagaga
caggatgtagatacagacactcagaaaagagaccaagacgaacctacttcacccacaact
agacagagagattcatcccgaagcagacacagagagaaagaggatataaagatcactaaa
gaacgaactccagccagcgaagaggaagcagcagagtgggaagccaatcgtgaagactct
gataacggtgactacgattacgagttatccctggaaatgaagaggcagaagatccagaat
gagctgatgaagctcgagcaggagaacatggacaaacgagaagagctcctcattaagaaa
gaggaatcagtgaccaagaccaggaccagcagcacttctaaagataaggggtctcctgaa
cacgctagctccaagaactcacccctgtcccgcaagtccagcggctcccccaaacgaaag
cccagtggttctcctaaacgcaagtccatcgggaagggcagcggctccggcaagaaggag
aagaaatcatcgtcttcatcagtcatctcctccccggtgatggagcagagcagaacggag
gaggctgagagcagatcatccaagagtggacacagcaagaagaaagggccacgcacaccc
agcccccctccccctgtgcccttggacctgcccgtaggaggcaaaaagcacaagggaaaa
cacaaaaacaaggagaagagcgaagacaagcagaaagaggccaaggagcggggcagagac
atcgataagcacaaggagaagaaagagaagcgcagggaccgctccgacagttcccacaag
gctaaacgatcagtaacgtcagaggaacgttctggaagcgtgtcatctcctggccgagag
gtgtcgccccagaccagaaggaagtcctcgtcccccaagtctaccacccaaaaacaaagc
tcaccgcagaggtctcgtaccccaccacgtcaccgccggagcctttctcctacgccccgc
cctcaccactccccctcatctcactctgggtcttcccaccaacgtcactccccatctcct
cgccgacgccgtggctccgcctccccgtcctaccaacgggacctgcttccccccttgtca
tcctcacccacagctgctcaggcctcacgtcgctcacgttcccgttcgccccccacgccg
cagaggtcaagccccgcttcccgccaccactcgcagggccgggaacgggaaaaagagaga
ggacggggggagagggatagaagccccacccacgacagacgtcacgaacgccgagatgag
agccgcggaaagcgcgagaaagatggcgggcgggacgatcgcagctacgaggccgatcag
agctcctcgcgagacgaccgtgagactcgagagagccgagaccgacgcttcgaccgagac
cggcgagacacgcgtgacgaccgacaacaccgcagcggggacgccaaggacgtgcgggac
accagagaccgctccggccgggagtcgatggaacacagggacagagaccgggacagagag
cgggaccgagagagggacagggatagggacaggaatgacgctcacaggaaagacgacaca
tcagtgcaggaagagagaagttacggaagaggacatggcagagaagagggacggagcgag
agcagggcagagagtaggaacgaatcacgcacagagaggacgggaagaggaaggggacgt
gcatcggacaactctgagaaaggatcagctcgtgggtctcgtgcgtctacatcgcaggca
gacagcggggggcatgatggatgggagtctcgtagcggtggactaagtgagaggagctct
gagagaaacacggagaaggggacagaacgtgatcgctatgacggagacaggcagcgcgga
gagcaggcccgagattcgtcttacgaccgccgcggtagtcaggcggacagagatcgccgt
gagcacagggacagagatcagagagcgccctcaccgggacgtcaccaaggccgcggcgag
gaaaccgagcgcgaggagaggagagacgagaggaggagcgaccgaggcgaggacagacgg
gaggacaggggccgtgagcgagaccgagaaagggaccgggagagagagagggagcgggaa
cgagagaaagagagggagcgagagactgagagggaaagggccagggagagagagcgggag
cgagaggaaagagagagagagcgggaacgcgagagggagcgagaacgagaggagagggag
agggaacgcgagagagaagagcgggaacgggagaggaaagagagggaacgggagagggag
ctccgagagagggagcggcagagagaatgggaggagagagagaagggcagggaggacagg
cgggagaggagagaggagagaggagatcctcatgaagagcgaaagaacagtgggcgcaag
aggcaccgtgtggagaacacccccagccccaggccctctcctaaaaaagtgcgggaaggt
agccctgcagacagcgatggctacaacagtacagaggaaaaaggtgataaacacagactc
ctgagtcaggtcgtccgtcctcaggagccaagccgctcccctccccgcgtcgtatccgcc
gacgacaagcccacacgctggagggacaacgaacgtcgtggtgacaagaaggacgggcgt
ggtcggcatgaagaagcagaacctcgtagagagcgaagtgccggtcgagggacagagcgc
cgtggggatcattcttctgagagttctctgactgttccagcatctgagtctcgcaggatt
aaagagcaaagagacgccatcgcaccacccgtcccctcagccagtggccccgaggtacga
gattctgcgtcggccggccatgaggaaggcaagaagaaaaccaagtctcagaaaaagaac
ctgaagaaaaacaggaaagaggatgagagcattagtgctggtggtgaccgttttaacccc
gagcccctgccaccgccttcctcttcctcctcctcagtacccactgaagcgccacgccca
cttctctcatcgcctaaggtggtcaagaagaaatcgctggagcagaggcggaagcgctcc
cggggcgccgagtctgacccgtctgaggatgagcaaccaatcagcaagagacgtcgtggc
cctcagacacctccgccaatcaacaaagaggacttgccttcccagcgagcgctgctctct
ggccacgctatagcaacaccgctcaaaatagacactaacttcagtgactggtctgatgag
gaagtcccagaacgcagcgacgctttacccgagcgagcaccagagcgcctgctgccccgt
cgaaacccacctctagccccattgctcccagacccgcccatggcgttgcacgcactcccg
ctacaaccgctgcagccgttgctgccgcagcacatgttgcgcaaaccgcagcaggctgac
caaaggcagcaacgcagtagcagcatgggtagcaaccagagttgggcagcttcgcgccgg
ctccgttcaccctccaacgactccgcccaccgcacagacgacagccagccggggccgcgt
tcacgcagggcacatggacagggcgccaattcccgtgaccgtgacagagagagagaaagg
gaacgagagagggataggacggcagctaccgaactgattggaggaagggaggagaggaag
tcgaggattgaccagttgaggagaggagagccgagtcgcagtacatcatcagaccgtcag
gattcacgtagtcacagttctcggcgcagctctccagagtcagagcggcaagcacgctct
cgggccggctcgcatgacagccgcgagcgtgaccgggaccgcgagcgtgaccagtttgag
cgtgacaggaaggaataccggcaaccgcagaaccagtcgctattacagccacgtgactgg
gagccagaaccgcgtgagtggggtgttcgaggtcgtgagcccctccttctccgccctaac
cgggagccaatcagagagcgggacttgcgcgagatgcgtgagcgggagagactgctgcct
gagggaccactctcacacgagcgccttgaccgcgacagggagagagacagagacagggga
gagcgagagcgggagcgcatgctgccctttgaccacccaccatcaggggaacccaagagc
cgagcagagatgcggatggagcgaggagactatgagcccctactgcctcgagaagccctc
atggacatggacaaacccagtgctacagaagagccacatgtacctgtggaaccctgtgag
acagagaagatagacagtcttgacgtagaggatgaaggtaagggtgaggacgtccagtca
gcagtgtccggtggggaggaatacgagcctatcagcgatgacgagctggatgagatattg
gctgacagtcagaaacgagatgatcagcaggatgaagagaaaattccaggacccctggac
gtgattgacgtggactggtcgagcctgatgcccaagcagaaacaggaaacccgagcacca
ggagctgcattgcttagattcacccccggagccatgctgctgcgggcgggcgtctcccgc
cgtctggctggtcctcagctcctcgcacgtgttaaagacgtctgtgctaaagagctggag
gatgctaaagatgcggagaagctgttcgagcacgaccttggtgctctgaacatggccgcc
ctcaacaggaggactgagagagcgaacctgctgagaaacctggggccgtgtggcaaggct
ctgtgtgcacgtcgagacatcgccatccgcaggcaactcctcaagaacgacaaggggacg
actaagcagatctacaccagtgctccagtggtggaccaagaacttctgcagctcagcata
cgtctcttcaagaagaaaatggctgccgggcaggagaaagccgacccggcgcctgtggct
ggcaccccagctgaggtgtgcgtgtcttaa
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integrated database retrieval system
