Ictalurus punctatus (channel catfish): 108258487
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Entry
108258487 CDS
T04658
Name
(RefSeq) antigen peptide transporter 2
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu02010
ABC transporters
ipu04145
Phagosome
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108258487
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108258487
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108258487
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ipu02000
]
108258487
Enzymes [BR:
ipu01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
108258487
Transporters [BR:
ipu02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
108258487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
MFS_1
AAA_21
Zeta_toxin
RsgA_GTPase
AAA_29
AAA_16
Motif
Other DBs
NCBI-GeneID:
108258487
NCBI-ProteinID:
XP_017312649
Ensembl:
ENSIPUG00000021586
UniProt:
A0A2D0Q2W4
LinkDB
All DBs
Position
26:complement(13757341..13762565)
Genome browser
AA seq
715 aa
AA seq
DB search
MSKLLVAALAVFSDLVMVYVLDLVGTHLRGEVRSLDGGADLVRQWTEAVLRCSLLCSVFY
WSDVRGQLMKRWVMAHCFITPVYETGRLTLLGIWPLEKFAMWLVGSVAAALGCLFWETLL
PESNGESSSKEKKQKARVLFMRVIRFYRPDYLFLISASVFLALAVLCEMFIPLYTGKLID
ILQTNYSWDEFLSAIILMTFFSFGSSFSAGCRGGLFMCAIGSFICRVKHRLFSCLLKQEI
SFFETTKTGDITCRLSTDTNLMARAVALNVNVLLRTLIKTLGMLYLMVSLSWKLTVLMLL
ETPLTGLLQNIYDTHYQSLSKKVQDSIARANDAAGEAVSGIRTVKSFNAKQSEKCRYDER
LMDTHNIKTQRDTVRAVYLLVRRLTELGVKVAMLYYGRLFVTYGQMTTGNLVSFILYQTN
LAQNIRTLIYIFGDMLNSVGAAGKVFEYLDRKPEVSTDGTLEPEELKGHVSFQNITFSYP
TRPDCSVLKDFSLELKPGKMTALVGSSGGGKSTCVSLLQRFYQPQHGHVLLDGQPLQNYQ
HKYLHSKIVAVGQEPVLFSGTIRDNIAYGLSDCSIKRIEEAARKANAHEFICQFPKGYDT
DVGERGSLLGSSQKQRIAIARALIRQPQVILLDEITSFLDPKSEQTVQQALANCPKQTLL
VIAHRLKTIEKADQIVVIDQGVIEEQGGHQELMEKEGYYYKMKEKLFTENNHNTS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacttttggtggctgctcttgctgtgttctcggatttggtcatggtctatgtg
ctggacttggtaggcacacacttgagaggtgaagtgaggagtttggatggtggagctgac
ttggtgaggcagtggactgaggctgtgctgagatgctcattgctctgctcagtcttctac
tggagtgatgtgagagggcagctgatgaagagatgggtcatggcccactgttttatcact
cctgtgtatgaaacaggtcgcttaactctgttgggtatctggccactggagaagtttgca
atgtggctggtcggcagtgtggctgctgctttgggatgcctgttttgggagacactcttg
ccagagtctaatggggaaagcagcagcaaagagaagaagcagaaagctcgagtgctcttc
atgagagtgatccgcttctacagacctgactacctgttcttaatctcagcatctgtcttt
ctagccctagctgtcctttgtgagatgtttattccactgtacacaggaaagttgatcgat
atcctgcagaccaattacagctgggatgaatttctttcagcaataatattaatgacgttt
ttctcttttggaagttctttcagcgcaggctgccgaggaggcctcttcatgtgtgctatt
ggcagctttatttgtagagtgaagcatcgactgttcagctgcttgcttaagcaggaaatc
agcttctttgagactacaaagacaggtgacatcacatgcagactgtcgacagacaccaat
ctcatggcgcgagctgtagccctaaatgtgaacgtccttctgcgaaccctgattaagacc
ctggggatgctgtacctaatggttagcctctcgtggaagctcactgtactgatgctgctg
gagacgcctttgactggccttctacagaacatctatgacacacattaccagagtctctca
aagaaggtgcaggactccatagcaagggcaaatgatgctgcgggagaggctgtgtcaggc
atcaggacagtaaagagctttaacgcaaagcagagtgagaagtgtcgctatgatgagcgg
ctgatggacacacataatataaagactcagcgggacacagtcagagcagtgtacctgctg
gtaagaaggctcacagagttgggagtgaaggtggctatgttatactatggtcgcctgttt
gtgacatatggacagatgaccacaggaaatctggtctcattcatcctctaccagactaat
cttgcacaaaacattaggactttgatttacatatttggagacatgttgaactctgtgggt
gctgctgggaaggtgtttgagtacctggaccgcaagcctgaagtgagcacagatgggacc
ctggagccagaggaattgaaaggacacgtcagcttccagaacatcacattctcatatcca
acacgccctgactgcagtgtgctgaaggacttcagtttggagctgaagcccggtaaaatg
actgccctggtggggagttccggtggtgggaaaagcacttgtgtcagtctgctgcagagg
ttttaccagcctcagcatggacatgtcctactagatggacagcccctgcagaactaccag
cacaaatacctgcacagcaagattgttgcggtgggccaggagcctgttctcttctcaggt
accatacgggacaatattgcttacggattgtcagactgttcaatcaagagaattgaggaa
gcagcacgcaaagccaatgcacatgaattcatctgccagttcccgaaaggttatgacaca
gatgtaggggaacgaggaagtcttcttgggagcagtcagaagcagcgcattgcgattgcc
agagctctaatcagacagccacaggttatattactggatgagatcacaagctttctggac
cctaaaagtgaacaaacggtccaacaagctctggccaactgccccaaacagaccttactg
gtgattgcacacagactgaagaccattgaaaaggcggaccagattgttgtgattgatcag
ggggtgattgaggagcaaggaggtcaccaggaacttatggaaaaagagggatattactac
aaaatgaaagaaaaactctttactgaaaataatcataataccagttaa
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