Ictalurus punctatus (channel catfish): 108258539
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Entry
108258539 CDS
T04658
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108258539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108258539
03036 Chromosome and associated proteins [BR:
ipu03036
]
108258539
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108258539
Coactivators
SAGA/TFTC/STAGA complex
108258539
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108258539
STAGA complex
108258539
TFTC complex
108258539
SAGA complex
108258539
SLIK complex
108258539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
TFIID_NTD2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_WDR41
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_Nup120_160
Beta-prop_SPT8
Tricorn_2nd
Beta-prop_VPS8
Beta-prop_HPS5
Cytochrom_D1
Tricorn_N
eIF2A
Motif
Other DBs
NCBI-GeneID:
108258539
NCBI-ProteinID:
XP_017312722
Ensembl:
ENSIPUG00000024363
UniProt:
A0A2D0Q355
LinkDB
All DBs
Position
26:17248217..17253019
Genome browser
AA seq
604 aa
AA seq
DB search
MKRGRTEQIQHAVAQYLKRRQYADVDGSLKGAKLSQSAEEMAANLMVQTESSCGNVVSAA
PCQSDPQQYETQFSRLCSFLLEAEAPLGRDVSAVLFPLFLYLHLDMARCGLRGAVDAFFS
RFHSSFQQDAEQRAIVEHLRGVITPQDVASNSKLCSLLDHKYVVHLTDEAYTYLLRYLQS
DDNSALCRVLSTHLQVEVSAVRRSDYQLYGAGLTTGNSTSMSCSGGWSGMDGTEGAESVD
ATAGLPPQNEAALEALQDCVRRVREGPPSLTTVCFYAFENTEQLLNAADVSPDSRLLAAA
FDNSALKLWSLRARKLKAGPRRANVSKIRLACDLVEEETEEEELGSEMKTLRGHSGPVYG
VAFLRDSSGLLSCSEDCTVRYWELRGFSNAAVYRGHAYPVWDVAVSPCGLYFCTASRDTT
ARLWTPARAHPLRLYAGHLADVDCVRFHPNSSYVATGSTDRTVRLWSTQHGGSVRLLTGH
RGPVLALAFSPDGRYLVSAGEDQRLRLWDLASGGVLKELRGHTGAITSLEFSPDSSLIAS
AALDNSVRVWDVRNAHGGGAVPPDGSSPELVGVYTGETSSVLNVRFSACNLLLVTGTAQE
KAEQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtggccggacggagcagatccagcatgccgtggcgcagtacctgaagagacgg
cagtatgcggacgtggacggttcgctgaaaggggccaagctgtctcaatctgccgaggag
atggcagccaacctcatggttcagacagagtccagctgtgggaacgtggtttccgcagct
ccgtgccagtcagaccctcagcagtatgagactcagttctccaggttatgcagctttctg
ctggaggcagaggcaccgttgggccgggacgtgagtgccgtgctctttcctctcttcctc
tacctgcacctggacatggcacgctgtggcctgaggggtgccgtcgacgccttcttcagc
cgcttccactcctccttccagcaagacgccgagcagagagccatcgtggagcatctccga
ggagtcatcacgccgcaggacgtggcctccaactccaaactgtgctctctgttggatcac
aagtatgtggtgcacctgacagatgaggcctacacttacctgctgcgctacctccagagt
gatgacaacagcgccctctgcagggtgctcagcacacaccttcaggtggaggtttctgct
gtgcgtcgctctgactaccagctctacggggcggggctcactacaggaaactccacctcc
atgtcctgttccggcggctggtctggcatggacgggacagaaggggcggagtccgtagat
gccacagcagggttaccgcctcaaaacgaggccgccttggaggcgcttcaggactgcgtc
cggcgtgtgcgcgagggtcctccgtccctcaccacggtctgcttctacgccttcgagaac
acggagcagctgctaaacgccgcggatgtgtcacccgacagccgcctcctcgccgccgcc
ttcgacaactccgccctcaagctgtggagcctccgagccaggaagctgaaggcagggcct
cgtagggccaatgtgtcgaagatacgcctcgcctgtgacctagtggaggaggagacagag
gaggaggagttgggcagcgagatgaagaccctgcgcggccacagcggcccggtgtacggc
gtggcgttcctgcgagactcctcaggtctgctctcgtgctcggaggactgcacggtgcgg
tactgggagctgcgtggtttcagcaacgctgccgtgtaccgaggccacgcctaccccgta
tgggacgtagcggttagtccatgtggtctgtacttctgcacggcgtcacgcgacaccaca
gcacgcctctggactccggcccgcgctcacccgcttcggctctacgccggacacctggcc
gacgtcgactgcgtgcgcttccacccaaactccagctacgtcgctacgggttcgaccgac
aggaccgtccggctgtggagcacgcagcacggcggctcggtgcgcctgctcacaggacac
cgaggccccgtactggcactcgccttctcgcccgacggcaggtatctggtgtctgcaggt
gaggaccagcggctgcggttatgggacttggcttcaggcggcgtgctgaaggagctgcgt
ggccacacgggcgccatcaccagcctggagttcagcccggacagctcgctcatcgcctcg
gccgctctggataactcggtgcgcgtctgggacgtgaggaacgcccacggcgggggcgcg
gtgcctccggacggctccagccccgagctggttggcgtttacacgggcgagacgagcagc
gtccttaacgtccggttcagcgcctgcaacctgctcctggtcaccggaacagcgcaggag
aaagcggagcagtga
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integrated database retrieval system
