Ictalurus punctatus (channel catfish): 108258643
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Entry
108258643 CDS
T04658
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
108258643
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
90S particles
Other 90S particles
108258643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
OB_RRP5_4th
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
OB_RRP5
TPR_19
TPR_14
HAT_Syf1_CNRKL1_C
NRDE-2
DUF7017
TPR_12
ARM_TT21_5th
ARM_TT21
TPR_16
RPN7
PPR
TPR_CcmH_CycH
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
108258643
NCBI-ProteinID:
XP_017312902
UniProt:
A0A2D0Q3N2
LinkDB
All DBs
Position
26:complement(10708419..10742580)
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AA seq
1816 aa
AA seq
DB search
MASVEDDFPRGGPVKKTSELKTTKTTKPRVEVDNLFEVREPVVRKKKAASKYEEEKTSKR
QKTQGGQTLNEIVRVDILHAKDLKVGTVMLGCVKEFLKFEVVLGLPSGLKGYMPISSICD
AYTKTLSNVLESGVYLEELVSPSELLTPGQLVRCVVTSLDVTKGSNVCIKLSINPKDVNK
ELKSSSLKAGMTLSGCVESVEDHGYLIDIGVNGTKAFLPNEKAKDELETSKRELKVGQYM
TVMLEEIKNEGQVVRLSANPTAVNQACAEKHHGWTLCNLLPGLLVKAYIKKVTSHGLIVT
FLSSYTGQVDFMHVNPDKLATCSVGEEVKARILYMEPSSRLVGLSLRSHLLPPSGGMLDN
VTCERMGEVVKGCKMVAVHFYSGALMLLPDETTAFVHKSQLSLKLNQPEYTLRITDYNPM
EQSHMATLHKNIIDVPFFSYQDVKAGQTVEGTVQRLERYGMHVQISNYIRGLVPRIHLAD
IILSNPENKYTEGMKIKCRVLSVDYQNKMITLSRKKSLMETTLPLFLSYKDARLGLISHG
FIVCVKDFGCIVRFYGDVKGLVPLSEMTSEPTKNPQSLFYIGQVVKAKVIKCDPENEKLL
LSFKAVTQNDLEKISNVKFDFEIGKKVEVVVCKKSPAGLEVSILPEEMPALLPTAHLSDH
VSNCPLLWAGIQEGDAVSNAVCLSKRKQNIILSKKPLLIAALEAENLVTCFSELDVGMVM
VGWVKTIMSYGVFVEFPHGLVGLAPKAAMSDKFITDPTVAFEVGQTVLAAVTNLDEEKRR
FLISLKASEVSWAESEPQARLIRGQRERMAVCEAMTSRGDSDLMQQLSAVSLGDKLKMTV
DVTREDGSVILTSDQLSHATVLASKYHVTDVNTTPGNQVTAVVLYVDYLTSEVHVSLLPN
LTVKKKTLNKDSQYTATVQYVDEDFAVISLGSTGHLTVITTTAHLNETFRFKSEKLSVGH
NITVIVTDPSSEHLGGRALVDQLSRENHSTSQNGSNEHKYKIGEFVMVKVKTVKPLCVLV
TMPDGTTGSVHVSQIHESPKVGGLPTSSLKVGTEVKGRIIGAREINGHRFLPITHPNFVF
SVPELTLLPSQMNEDVPVASLENKPTPESYNPGQELICYVAKYIPRSKSLEVAVSPTLFG
YVELMDMITKRREANEPQKLFKHGQCVSAKVVSISPKKHQHLKLSLTGTRTLETGVVTMG
MVWKSIPHMGLLLKLPCGNFGLARITDLTDEYVDAPFEQFKEGQVVRCCVVGKEGWRFLL
SLRPSRIKPGKALPVKDVDINSISDLEVGQVIQGYVKNVGERGIFVRLSRSVVGRVLFQN
ATNYFASDTDLFFKYVSQNTLLTAKILCIDTETSHVDLSLLPEDTGKADILPESLGLPLR
LRGKKKELRDQRNTERKRTMSESKQNEAVPQKRVRKEEEEKKAPEIKKKNKLTKEKAQAE
DQDSGVEVYFREKDKKDKVKKKGKIEVCAPDVPCRLQVASDFSWDIALSALKPASSAQNT
YESSDDEQDDHSKTPKKSRRQAETERKEAELKLSKLEAELMEPLSRPESAEAFERLLLSS
PDSSLLWMQYMAFQLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEE
SLQKVFERAIQYCEPMPVYQQLADIYAKSNKIKEAENLYKNMVKRFRQEKAVWQSYGSFL
LRQGQSDAANALLQKALQSLTNKEHVDLIVKFARLEFQYGNEERAKAMFEKVLSTYPKRT
DVWSVFIDLMMKHSSQKDVRALFDRVVHLSVSVKKIKFFFKRYLDYEKKHGTPESIQAVK
QKAMEYVESKGTDAAN
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagtagaagatgatttccctcgtggtggcccagtcaagaaaacatctgagctg
aaaactactaaaactacgaagcctcgtgtggaagtggacaatctttttgaggttcgagaa
cccgtagtgagaaagaagaaagcagcgagtaagtatgaagaagaaaagacttccaaaagg
cagaaaactcaagggggtcagacgctcaacgaaatagtccgcgtggatatcctccatgcg
aaggatctgaaggtgggcacggtgatgctcggctgtgtgaaggagttcttaaagttcgag
gttgtactcggtctccccagtggtctcaaaggctacatgcccatctctagcatttgcgat
gcgtacacgaagaccctgagcaacgtactggagtctggggtctatctcgaggaactcgtc
tctccttccgagctcctcaccccgggccagctggtcagatgtgtggtgacgtctctggat
gtgaccaaagggagcaatgtctgtatcaaattgtccatcaacccaaaagacgtgaacaag
gagctcaagtccagctctctgaaagcaggcatgactctcagtggttgtgtggagagcgtt
gaggatcacggctacctgatagacattggagtgaacggaacaaaagcctttctacccaac
gagaaggcaaaggatgaactcgagacatctaaaagagaactgaaggtggggcagtacatg
acggtcatgctggaggagataaaaaatgagggacaggtggtgcgtctttctgcgaaccct
acggccgttaatcaggcctgcgcagagaaacatcatggctggacattgtgtaacctctta
cccgggctgttggtaaaagcctacatcaagaaggtgacgtctcacggcttgatcgtaacg
ttcctctcatcttataccggccaggtggacttcatgcacgtcaacccagataaattggcc
acttgtagtgtaggggaagaggtgaaagctcgcatcctgtacatggagccgtcctctcgt
ctggtgggtctgtctctgcgtagccacctcctaccaccgagcggtggcatgttggacaac
gtaacgtgtgagcgaatgggcgaggtggtgaagggctgcaagatggtcgctgtacatttc
tactccggagctttgatgttgctgccagacgagaccaccgcctttgtgcacaaaagccag
ttgagcctaaaacttaatcagcctgaatacacactgagaataacagactacaacccaatg
gagcagagccacatggccacactgcacaagaatattatcgacgtgcccttcttcagctat
caagatgttaaagcagggcagacagttgagggcacggtgcagcgcctggagaggtacggc
atgcatgtccaaatctcaaactacattagaggcctggttcccagaattcacctggcagac
atcatcctcagcaaccctgaaaataagtacacggaaggcatgaagatcaaatgcagagtt
ttatcagtggattaccaaaataagatgatcacactgagcaggaaaaagtctctgatggag
accacactccctcttttcctgtcgtacaaggacgcgcgtttaggtctcatctcccacggc
tttatcgtctgcgtcaaggactttggctgcatcgtaagattctacggtgatgttaagggc
cttgtgccgctgtctgagatgacctcggagcccaccaaaaatccacagagtcttttttac
ataggacaggtggtgaaagccaaagtgatcaagtgtgaccctgaaaatgagaaactgctc
ctgtcctttaaagcagtgactcagaatgaccttgagaagatctcaaatgttaaattcgac
tttgaaatcggaaagaaagtggaagtcgttgtatgcaagaaatccccggctggccttgaa
gtgtctattcttccagaagagatgcctgctctgcttcccacagcgcacctctctgaccat
gtctccaattgccctttgctgtgggcggggatacaggagggagacgccgtctccaacgct
gtgtgtctgagcaaacgcaagcaaaacattattctcagtaagaagcccttgctgattgcg
gctctagaggcagaaaacctggttacgtgtttctcagagctagatgtggggatggtgatg
gtaggctgggtgaagaccatcatgtcctacggcgtctttgttgaattccctcacggcctg
gtcggcctcgcacccaaagctgccatgagtgataagttcatcacagatcccacagtagcg
tttgaggtaggacagacggtgctggccgcagtgactaacttggatgaggagaagcggcgg
ttcttgatcagcctgaaggcgtcagaggtgagctgggcagagagtgaaccccaagccaga
ctgatccggggtcagcgcgaaagaatggccgtctgcgaagccatgacctcgagaggtgac
tcggacttgatgcagcagctctccgctgtgtcacttggggataaactgaagatgaccgtc
gacgtgactagagaggatggctcggtcatactgacctcagatcagctcagccatgccaca
gtcctggcctccaagtaccacgtaacagatgtgaacaccactccgggcaatcaggtcact
gctgtggtgctttacgttgactatttgacctctgaggtgcatgtgtccctcctgccaaat
ctcacggtgaagaagaaaacgttaaataaagactcccagtacactgcgactgtccagtac
gtggacgaagactttgccgtaatctcattgggcagtaccggtcacctgactgtaattacc
acaaccgcccacctaaacgaaacgttccgtttcaaatctgaaaagctgtccgtgggtcat
aatataaccgtgatcgtaactgacccaagcagtgaacatctgggtggacgagctctcgta
gatcagctgtcacgtgaaaaccacagcacgtctcagaatggaagtaacgaacacaaatac
aagatcggggagttcgtgatggtgaaggttaaaaccgtcaaacctctgtgtgtactcgtg
actatgccggatggaaccacaggaagcgtgcacgtttctcagatccatgagtcgcccaaa
gtaggaggactccccacgtcgtccctgaaggtcggcactgaggttaagggaaggatcatc
ggtgctcgtgagatcaacggccacaggtttctccccatcacacatcccaactttgtcttc
tctgtgcctgagctcacacttctccccagtcaaatgaatgaagatgtgcctgtcgcctca
ctggagaacaagcctacaccggagagctataaccctggacaggagctcatatgctatgta
gctaaatacattccacggtcaaagtctcttgaggttgcggtgtctccgaccctctttgga
tacgtggagctgatggatatgatcactaaacgcagagaggcaaatgagccacaaaagctc
ttcaaacatggccagtgtgtctccgcgaaggtcgtcagtatcagccccaaaaagcatcag
catctcaaactttcgcttacagggacgcgcactctcgagaccggggtcgttaccatgggc
atggtgtggaaaagcatcccccacatgggcttgcttctgaagctgccgtgtgggaatttc
ggccttgcacgtataaccgatttaacagacgaatacgtggacgctccgtttgagcagttc
aaagaaggccaggtggtcagatgctgtgttgttggcaaggaaggctggaggttcctgttg
tctctacgcccatccaggatcaagcctggtaaagccttaccagtcaaagacgtggacatc
aactctatctcggatctcgaggtgggacaggtcatccaaggttacgtaaagaacgttgga
gaacggggcatatttgtgaggttatccagatcagtcgtcggaagagtcctgttccaaaac
gccacaaactactttgcaagcgacaccgatctcttcttcaaatacgtctcccagaacaca
ctgctgacagccaaaattctctgcattgacacagagaccagccatgtggacctctccttg
ctcccagaggacactggaaaagcagacattctcccagaatcccttgggcttccgctgcgc
ctgaggggaaagaaaaaggagttgcgtgaccagaggaataccgagaggaagcgcacgatg
tctgagagcaagcagaatgaagctgtaccacagaagagagtaaggaaagaagaagaagaa
aaaaaggctccagagatcaagaagaagaacaagttaacgaaggagaaagcgcaagctgaa
gatcaggatagcggagttgaggtgtattttagagaaaaagacaaaaaggacaaagtaaag
aaaaagggtaaaattgaggtttgcgctccagacgtgccatgcaggctacaggtagcatct
gatttctcctgggacatagcgctgagcgctctcaaacctgcatcttcagcccaaaacacg
tacgagtccagcgacgatgagcaagacgatcacagcaagacaccgaagaagtctcgtcgg
caggcggagacggaacgaaaggaggcagagctcaagctcagcaaactggaggcggagctc
atggagcccttgtcgcgaccggagagcgcagaggcgtttgagcggctgctgctctcgtct
ccagactcgtctctgctctggatgcagtacatggccttccagctgcaggccacacagatc
gagcaggctcgcgctgtagccgagagagccctcaaaacaatctctttcagggaggagcag
gagaagctgaatgtgtgggtagctctgctcaacctggagaacatgtacggtactgaagag
agccttcagaaagtgtttgagcgagccattcagtactgcgagcccatgcctgtctaccag
cagctggcagatatttatgccaagtccaacaaaatcaaggaagcagagaacttgtataag
aacatggtaaagcgcttcaggcaggagaaggccgtatggcaaagttacgggtccttcttg
ctgcgtcagggacagagcgatgctgccaatgctctcctccagaaggcactgcagagtctg
accaataaagagcatgtggacctgatagtcaaatttgctcggttggaattccagtacggg
aatgaagagcgagcaaaggccatgttcgaaaaggtcttgagcacctaccccaaacgcaca
gatgtgtggtctgtttttatagacctgatgatgaagcacagctcacagaaagatgtcagg
gctctctttgatcgtgtggtacacctgagtgtgtctgtgaaaaagatcaagttcttcttc
aagcgctacctggactacgagaagaagcacggcacaccagagagcatccaagcagtcaag
cagaaagccatggagtacgtggagtcaaaagggactgacgccgctaactag
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