Ictalurus punctatus (channel catfish): 108258648
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Entry
108258648 CDS
T04658
Symbol
rfx1b
Name
(RefSeq) MHC class II regulatory factor RFX1
KO
K09173
regulatory factor X 1/2/3
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108258648 (rfx1b)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Other basic domains
RF-X
108258648 (rfx1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
RFX1_trans_act
DUF3156
ThermoDBP-RP_arch
Motif
Other DBs
NCBI-GeneID:
108258648
NCBI-ProteinID:
XP_017312909
Ensembl:
ENSIPUG00000005967
UniProt:
A0A2D0Q5D7
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Position
26:17647171..17666456
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AA seq
842 aa
AA seq
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MATPGYTEELQSSQPQGGSVTTPKSGQQKASPTVTPAFLPDIQSSSGSSPSQAGLSSRIT
QTTPPAILKKAVLATPTQVTAAVAQYEIPSSASGSSNGQNTPQYIVVTVSEGSVHSNDSV
SDSSPPPTVQTGVPTHVVQTAQRSVVQTTAKSGQHGVGNLHITPEISQVGHVYSSQVQYV
DGDGNYNTTPIRSSTYPFTESSLYGQATPSGPYYDDPPTTVSQVSTPVTSQPVSVTTGFS
GGGTGVTVVSGASSSGGGGGGAGSGVVAGGGAGSASSGGGAGGYVVPGNYVMGSAGQNYT
HNIRASPATVQWLLDNYEKAEGVSLPRCTLYYHYLLHCQEAKLEHVNAASFGKLIRSMFL
GLRTRRLGTRGNSKYHYYGLRIKSSSPLHRLMEDQQHLAMRQQPFSHKHRIRPVQKVEGM
TNGMGMGVGQGAGQGVGLFDISSHIQQYQQFLDSSRSLPEFSEIDLQGKALPEGILPEHI
RAYQQLYREHCEAIVDVMVNLQFPLVETLWKSFWRFSEGQTNEALDLHSESEKRLPKACL
VLLCQYEPVLQWSRNCDNTLYQILVEILIPDVLTPIPSALTQAIRNCAKSLENWLTGAMM
NIPEEMVRIKVVCAGAFAQTLRRYTSLNHLAQAARAVLQNSAQITQMLNDLNRVDFNNVQ
EQASWVCACEERMVQRIEQDFKMTLQQQKSLEQWAAWLDSVVTHVLKPYTSSPSFTKAAK
LFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLVEHRVAQAKGETPIAVMG
EFANLGRNDSAADADKEEEEEEEDESDEDQMPIPVDANAVGEESLEPPAKLARTDLFNST
HN
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccaggctacacagaggagctccagtcctcccagcctcaggggggcagcgtg
accacgccgaaaagcggccagcagaaagccagtcccactgtcacgcccgcgttcctgccg
gacatccagagctcgtccggctcctccccttcacaggcaggcctttcctctagaataacg
cagaccacgcctccggcgatcctcaagaaggccgttctggccacgcccactcaggttaca
gcggcggtggcacagtacgagattccgagctccgcctccgggtccagcaacgggcaaaac
acaccacagtacatagtggtgaccgtttcagaaggatctgtccattcgaacgactccgtg
tcggactccagtccgcctcccaccgtccagacgggtgtgccgacacacgtggtgcagact
gcacagaggtcagtagtgcagaccacagccaagagcggccagcatggagttggcaacctg
cacattactcctgagatctctcaagtagggcatgtctactccagccaggttcagtacgtg
gacggagacggcaactacaacaccacacccattcgttccagcacgtacccgttcacagag
tcctccctctacggccaggccacgccctccggcccgtactacgatgatccgcccacgacc
gtgtcacaggtctccacccccgtgacttcgcagccggtttccgtgactacgggattctca
gggggtggtacaggggttacggtcgtatctggagcatcgtcttcgggtggagggggaggc
ggggccggatccggagttgttgctgggggcggggctgggagtgcctccagcggaggagga
gcagggggttatgtggttccaggcaactacgtgatgggaagcgcaggccagaattacacg
cacaacattcgtgcctcacctgctactgtgcaatggctgttggataactatgagaaggca
gagggtgtgagtctgccgcgctgcacgctgtactatcactacctgctgcactgccaggag
gccaagctggagcacgtcaacgccgcctcctttggcaaactcatccgctccatgttcctt
ggcctgcgcacccgccgactcggcaccagagggaactcgaagtaccactactatggcctt
cggatcaagagcagctcccccctgcaccggctcatggaggaccagcagcacctggccatg
agacaacagcccttctcgcataagcacaggattagaccggtgcagaaagttgagggaatg
accaatgggatgggcatgggggtgggccaaggagcaggccagggggtggggctgtttgac
atcagctcccacatccagcaatatcagcagtttttggattcgtctcgttctctgcctgag
ttttcagagattgatctccagggaaaggccctgccagaagggattcttccggagcatatc
cgagcctaccagcagctctaccgggaacactgtgaggcgatagtggatgtgatggtgaac
ttgcagtttcctctggttgagactctgtggaaaagcttttggagattcagcgaggggcag
actaatgaagcactcgaccttcacagcgaatccgagaagcggctgccgaaagcatgcctg
gttctgctgtgccagtacgagccggttctgcagtggagccgcaattgtgacaacacgctc
taccagatcctagtggagatcctcatccccgacgtgctcacacctatacccagtgcctta
acacaagccatccgcaactgtgccaagagtttggagaactggctcaccggtgccatgatg
aacattccggaggagatggtccgcattaaggtggtgtgtgcaggagcatttgcgcagaca
ttgcgcagatacacctctctgaatcacctggctcaggcggcccgagccgtgctgcagaac
tcggcccagatcacgcagatgctcaacgacctcaaccgagtggacttcaacaacgtgcag
gaacaggcatcatgggtgtgtgcatgcgaggagcgcatggtgcagcggatcgagcaggac
tttaagatgacgctgcagcagcagaagtctctggagcagtgggccgcgtggctggacagc
gtcgtcacgcacgtcctcaaaccctacacgtccagcccgtccttcaccaaagctgccaaa
ctcttcctgctcaagtggagcttctatagctcaatggtgatcagggatctaactctgcgc
agcgcggccagtttcggctcgttccatctcatcaggctgctgtatgatgagtacatgtat
tacctggtggagcacagagtcgctcaggccaaaggagaaacacccatcgctgttatggga
gaatttgccaacctaggccggaacgacagcgcagcagatgcagataaagaagaggaagaa
gaggaagaggacgagagtgacgaggaccagatgcctataccggtcgacgcgaatgctgtg
ggggaggagtctctggaaccgcccgccaaattagccaggacggacctgttcaacagcact
cacaactaa
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