Ictalurus punctatus (channel catfish): 108258660
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Entry
108258660 CDS
T04658
Name
(RefSeq) uncharacterized protein LOC108258660 isoform X2
KO
K10897
partner and localizer of BRCA2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03440
Homologous recombination
ipu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108258660
03460 Fanconi anemia pathway
108258660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108258660
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
108258660
FA (Fanconi anemia) pathway
Downstream FA components
108258660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
108258660
NCBI-ProteinID:
XP_017312942
Ensembl:
ENSIPUG00000001303
UniProt:
A0A2D0Q3S3
LinkDB
All DBs
Position
26:453579..470251
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AA seq
1557 aa
AA seq
DB search
MSEENLTSQDKEELKRRLELLQREYERTAQRLQRAEWREAVRKNVQNTITEQNRLLHINT
SAMLEQSSSSSPEPLSNPNVPSDMTKVRFHLPDSSPFSTLTRKQSPSRTHRLRSKRSRLR
LQGRGRESDTEESQEKTGEGTEERWREEQGEMESECERTGEEKEKDVERGRKEEEKKEEN
REKTEMLKDGLKKNEEKLTPSSILQSAAENSSVDQSHLTKLLEVNDPPADQSALRNSPSA
SYRSDSSDRPNPSSEARSPSCSGIANDAEKSPGSADFLTSCTLIEGLPFPVEYYVRTTRR
MASARASVDLNAVLQSQLSNGRGRRRSSRGRVTSRPSSEKPPERSGCRKRGPRGRRGRGR
ARETNSSGQSESLLRSPSSLPQEESEPIPSPKPSSDPAPDPQLHLGRELSADSRAYPIFR
KRRGRAGVSRSQIPASVHDSSHLLPSLTSLTQALRRMKEFPNRGGLRSVSDMQDFHLPDD
EFGQLKLERLRSSSNAELLAYSACCRKNGSVNISEGGQVENESVVLDPCLESSLPLMFTE
PRRAETGNADQSEREIASQTLDNPQESDDLLRRSFATRAEVHHDRGDEKHTQQIEPNDPH
TLTASRSFMLNLSVSLTSHTQTDHKTSLISLGATPNVFIASPSSELTPFPLSSDQDVASG
QSQAEGNKGTPENENVSGSPKVQIQGCDACEHSYSRSYSSDRSTTNHVLISAEVEIQGSN
VSDEKGVTQVNSSTRENNAEVPKLTNQVLMCSETESQHHITYALSHNNPLLSKNNPLLSQ
NNPLLSQNGPARSQNDPPLSQNGPPCPQNGTPLSKNDPPLSQNDPPLSKNDLLSQNDPRL
SQNDLHLSQNDPPLSQNDLFFPQNSPPLSQNDPPLSQNDPPCAQNGPPLSQNGPPLSQNG
PPLSQNGPPLSQNGPPLSQNGPPLSHNDPPLSHNDPPLSHNDPPLSQNCPPLSQNDLFFS
QNDPPLSQNGPPLTQNGPPLSQNDPPLSQNDLQLSQNGPPLSQNDPPLSQNGPPLSQNGP
PCAQNGPPLSQNDPPLSQNDLHLSQNGPPLSQNGPPCAQNGPPLSQNYPPLSQNGPPCAQ
NGPPRAQNGPPLSQNGPPLSQNDPPCAQNGPPLSQNGLPLSQNDPPCAQNGPPLSQNEPA
QKTRTPDSDEPYTISELDFHSQTPMRETSPRVEENNMLNSQTSALPVVSANQREDSEATL
SFSLVKPSQTHTRGSLSQHVELPSCGSLRRTHTLKALDGGCVLDVCLVRWLSDDWCVCVA
GEWSVCVWKQKAGVQQWSLLYTWTFTQSVISLQGIPDSSALLCVCLGRLEITETRILSCP
STDGEFSQAELYKGLPLQAVLTVSERRVACCSASGAQQNVQVFTLTQDGRIAETLPLVST
YQSIQTLVAVERQKDALIGWTEHKSLLIWNMKSGQLLQTIHLAPESVSTATCLRGYSYRG
ALCVLLQQVSACHDEAGSTLFTLIATNPLTGEYLSLRSIATPAAPTERLIDSDVCESALV
GVFQSGLAIWNLAGGVACAYVSEPAGVCRLARWAGPNTLLTGYLNGDVNIYQRTERS
NT seq
4674 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaggaaaatctcacgagccaagataaagaagaactgaagaggcgactggagctg
ctgcagagagagtacgagaggacagcacagagattacagcgtgctgagtggagggaggcg
gtccgtaagaatgtccagaacacgatcacggagcagaaccggctgctgcacatcaacacg
tcagccatgttggaacagagctcttcttcttccccggagccgctttctaacccgaatgtt
ccttcagacatgacaaaggttcgcttccatcttcctgactcctccccgttttccaccctg
acgcgtaaacaaagcccgtctcggactcaccgtctccgttccaagcgcagccgtctgcgt
ctgcagggcagggggagagagtctgataccgaagagagtcaagaaaagacaggagaggga
acggaggagaggtggagggaagagcaaggagagatggagagcgagtgtgagcgtactggc
gaggagaaggagaaggacgtggagagaggacggaaggaagaggaaaagaaagaggagaat
agagagaagacagaaatgttgaaggacggattgaagaaaaatgaagaaaaattgacacct
tcttcaattcttcaatcagcagcagagaactcctctgtcgatcagtcgcatctaacgaag
ctgttagaagttaacgatcctcctgctgaccaatcagctctcagaaattccccatccgcc
tcctaccgctccgactccagcgatcgtcccaacccatccagtgaagcacggagtccgtcc
tgctctgggatcgctaatgatgcggagaaaagtccaggaagcgctgattttttaacttcc
tgcaccttaatcgaaggtttgccgtttcctgtcgagtattacgttcgtaccaccaggcga
atggcgtcggctcgtgcctcagtggatctgaacgctgtactccagagccagctctcaaac
gggcggggcagacgaaggtcgagcagaggtcgcgttacctcacgaccttcgtctgagaaa
cctcctgaaagaagcggatgtagaaaacgaggtccgagaggacgtcgaggtcgcgggaga
gcacgcgagaccaattcatccggtcagtccgagtccctcctccgatctccgtcttccctt
ccacaggaggaatccgagccgatcccgtcgcccaaaccgagctcagaccctgctccggat
cctcagcttcacctcggccgtgagctctcggcagattcccgagcgtatccgattttcagg
aagaggcgtggacgggctggcgtgtctcgttctcaaatccccgcaagcgttcacgattcc
tcacatcttctgccttcgttaacgtctctcactcaagctctgagaagaatgaaggagttc
ccaaaccgcggcggtctgcgaagcgtctcggacatgcaggatttccaccttccggacgac
gagtttggccagctgaaactggagcggcttcgctcgtcctcgaacgcagagctgttggcg
tacagcgcctgctgcagaaagaacgggagtgtgaacatttctgaaggtggacaggtagaa
aatgagagcgttgttctggacccttgtttagaaagtagtcttcctttaatgtttaccgag
ccacggcgggcggagacggggaacgccgaccaatcagaacgcgagatcgcgagccaaacc
ctcgataatccgcaagaatctgatgatcttttgcgcagatctttcgcaacccgagcagaa
gtgcaccacgacagaggagatgaaaagcacacacagcaaatcgagccgaatgatcctcat
acactcacagctagcaggagtttcatgctaaatcttagcgtgtccttgacctcacacacc
cagactgatcacaaaacttctctcatctcattgggtgcgacccctaacgtgttcatcgca
tcgccttcctcagagctcacgccttttcccttatcttctgatcaggatgttgcttcagga
caatcccaggctgaagggaataagggaacaccggaaaacgaaaacgtttcgggaagccct
aaagtgcagatacaggggtgtgatgcctgtgagcattcttacagcaggagttatagttct
gaccgttctacaaccaaccacgtcttgatatccgctgaagtggagatacaaggttctaat
gtttctgatgaaaaaggagtgacgcaggtgaacagcagcacacgtgaaaacaacgcagag
gttcccaaactgacaaaccaggtgctgatgtgctccgaaacggagagccagcatcatatc
acttatgctctttcccacaataacccccttctttccaaaaataacccccttctttcccaa
aataacccccttctttcccaaaatggccccgctcgttctcaaaatgacccccctctttcc
caaaatggccccccttgtccccaaaatggcacccctctttccaaaaatgacccccctctt
tctcaaaatgacccccctctttccaaaaatgaccttctttcccaaaatgacccccgtctt
tcccaaaatgacctccatctttctcaaaatgacccccctctttcccaaaatgacctcttt
ttcccccaaaatagcccccctctttcccaaaatgacccccctctttcccaaaatgacccc
ccttgtgcccaaaatggcccccctctttcccagaatggcccccctctttcccagaatggc
ccccctctttcccagaatggcccccctctttcccaaaatggcccccctctttcccaaaat
ggcccccctctttcccacaatgacccccctctttcccacaatgacccccctctttcccac
aatgacccccctctttctcaaaattgcccccctctttcccagaatgacctctttttttcc
caaaatgacccccctctttcccagaatggcccccctcttacccaaaatggcccccctctt
tctcaaaatgacccccctctttctcaaaatgatctccagctttctcaaaatggcccccct
ctttcccaaaatgacccccctctttcccagaatggcccccctctttcccagaatggcccc
ccttgtgcccaaaatggcccccctctttctcaaaatgacccccctctttctcaaaatgat
ctccatctttctcaaaatggcccccctctttcccagaatggccccccttgtgcccaaaat
ggcccccctctttcccagaattacccccctctttcccagaatggccccccttgtgcccaa
aatggcccccctcgtgcccaaaatggcccccctctttcccaaaatggcccccctctttcc
cagaatgaccccccttgcgcccaaaatggcccccctctttcccagaatggcctccctctt
tctcagaatgaccccccttgtgcccaaaatggcccccctctttctcagaacgagcccgct
cagaaaacgaggactccagactctgatgaaccttacactatctctgaactggattttcat
tcccaaacaccaatgagagaaacgtcaccccgtgtagaggagaacaacatgttaaacagc
cagacatctgcacttcctgttgtctcagccaatcagagggaagatagcgaggctacttta
tctttcagtttagttaaacccagtcaaacacacactcgaggttctctgagtcaacacgtg
gaactcccttcctgtgggtctctccggagaactcatacgctgaaggcgctggacggaggg
tgcgtgctggatgtgtgtttggtgcgctggctgtctgatgactggtgtgtgtgtgtggcc
ggagagtggagtgtgtgtgtttggaagcagaaagctggagtccagcagtggagtcttctg
tacacctggacctttacacaatccgtgatctctcttcaggggattcctgactcttctgct
ctgctgtgtgtgtgtttggggaggctggagatcacagagacgaggatactgtcctgcccc
agtacggatggtgagttctcccaggctgagctgtataaaggtttacctctgcaggcggta
ctcactgtctccgagcgcagggtggcgtgttgctccgcctcgggagctcagcagaacgtc
caggtgtttacacttactcaggatggcaggatcgcagaaactctgcccctagtctccact
tatcaaagcattcagaccctggtggcggtggagaggcagaaagacgctctgattggctgg
accgaacacaagagtctcctcatatggaacatgaaatcaggccagcttcttcagacgatt
cacctggcgccggagagtgtttccacggcaacctgtctgagaggatactcctacaggggt
gcgctgtgtgtgttactgcagcaggtgagcgcgtgccacgacgaagccggttccacgctt
ttcactctgatcgccacgaatccactcacaggagaatatctcagtctgcgctccatcgcc
accccagcagctcccacagagcggttgatcgacagtgatgtgtgtgaatctgcactcgtg
ggcgtgttccagtcaggtctggctatctggaacctcgcagggggcgtggcctgcgcgtat
gtaagtgagcctgcaggagtgtgccgcctggcgcgatgggcggggccaaacacgctcctc
accggatacctcaacggggacgttaatatttatcagagaacagaacggagttaa
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integrated database retrieval system
