Ictalurus punctatus (channel catfish): 108258925
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Entry
108258925 CDS
T04658
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108258925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108258925
Membrane trafficking [BR:
ipu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108258925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Clathrin
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
zf-RING_5
WD40_CDC20-Fz
zf-RING_UBOX
zf-RING_2
zf_RING_Vps8_fungal
zf-RING_11
Beta-prop_WDR5
zf-C3HC4
ANAPC4_WD40
PHD_4
Beta-prop_HPS5
Beta-prop_WDR3_1st
EIF3I
zf-C3H2C3
WDR55
Motif
Other DBs
NCBI-GeneID:
108258925
NCBI-ProteinID:
XP_053532383
Ensembl:
ENSIPUG00000022040
UniProt:
A0A9F7TEK1
LinkDB
All DBs
Position
26:complement(14183667..14295328)
Genome browser
AA seq
1419 aa
AA seq
DB search
MSESPDTRSLMSASSQLNLMEIDAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFVLEDT
CLLNTENMDAHSCETSSLASSDSGDRAHLKRRRKAVETNATIHGSVLRHNVLKGISAQII
SAADKVDAGLPTAITVSSVIAVGTSHGLALVFGKHQNQALRLCLGTTATGAEYGAVSALT
INHDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDLPTLAVCNDSGG
SVFELSFSRRVMGMRTCESRCLFSGSKGEVCCIEPLHAAPELKDHPITHYCLLAMASLTK
ILVIGLKPSLKVWMTFPYGKTDPASVPQLAWQFVAAQKAVNPILAFCRGDTVHFLLVKKD
ESGTVHVIKQRQLQLNCDIISLTWLNPRTLVLMDSGEKLHAVDRPSQEELETLDLAEVQL
VYNSSHFKSLATGGNVSQALALVGEKACYQSVCSYGGQIVYLGTKSVHVMTLRNWRERVD
HLLKQEKYTEALSLAWSFHEGTAKAVLGLFGDPAKRKGVVADKMVEILFQYVERSLKKCP
EQGKIQLLEQHFQDMIPVMVDYCLLLQRTDLLFNQIYSRLVENSVAKGVFLESLEPYILS
ERIGCLTAPVMRDLLSYFQENGMMESVEGCLVHMDITNLDIQQVVQMCWDNQLYDAMMYV
FNSGMNDYISPMEKLFQVIGPPLREGKPLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPE
DLVPQVKNQVFEFLIRLHSLEAIQEEEVYPYIRTLLHFDTREFLNVLALTFEDFKNDKQA
LEYQQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCS
PDDDSRHTERQQVLLELLQVGGMVQFDEGRLLTLAEKAEFFQICEFLYEQKHLYDQIIAC
YLKDPLRKEEVYNYIHNILSMPGYSPEEKQTTWNKSLEHIKELVSINPAKAAELVAGHFI
SEVGPIITALQDDHLVFQFLRKLLDPSDGQKPHAVRNLGPELHELLVDLMCRFSPRQVTP
FLETSESYRLEETVKITKQHELHEATAYLLEKKGDVQGAFQVLLQTLKEKLNTLVQESSE
AATPRSAREEEDVDYTPLARVEEALNDIITLCHRSSHGLNQQQREALWFPLLEVMMSPQK
FLKGPNAKDVSDALKELTMKVLNNMSSFIALPAIIQRILQDPVYGKGKLAEIQGLILGML
ETFNYEQTLLETTTNLLNSDLHWSLAHLRKAVSRGLYPRQDHCNICLQQYKRRQESEEEI
IIFSCGHLYHCQCLQRKEQWVVGKDPGLAGDRVHSWSCYKCTSSQGARPGDRLLAEGRRV
RSTSLAQTKVTSVHRGTAAETHHRKELTEVTLDAQQTQAWDQLRCMYRGPSRLAILTELT
HSHSSERTGLLNPAHPGTGSIYHSENFSLKLSPPPMVEE
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtcaccggatactcgcagtctgatgtcggcgtcctcacagctcaatttaatg
gaaatagatgctattgacgacaaagagttcgacatccctcaagttgacacgccaccgact
ttagagagtattctgaacgagcctgaagatgaggacgaacccttcgtcctggaggacacg
tgccttttgaacacagagaacatggatgcgcattcctgtgagacgtcctccctcgccagc
tcagacagtggagaccgtgcacacctaaagaggagaaggaaggcggtggagactaatgca
accatccacggctcagttctgagacacaacgtgctgaaaggcatctcggctcagatcatc
tcggctgcggacaaagttgatgcaggcttgccaacagcgatcaccgtatccagtgttatt
gctgtgggaacgtcgcatggcctcgctctggtgtttggtaagcatcagaaccaggcgctg
aggctgtgcttgggtaccacggcgacgggggcggagtacggcgcagtgtcagctctcact
attaaccatgattgcacgcgtctgctttgtggcttcgctaaaggacagatcaccatgtgg
gatttggcaaacgggaagctcctgcgcaccatcaccgatgcccacccacccggcacggcc
attttgcacgtcaagttcacagatctgccgacgctcgccgtgtgtaacgacagcggcggg
tctgtgtttgaactctcattcagcaggagggtgatggggatgaggacatgtgagtctcgg
tgtttgttcagcggcagtaagggggaagtgtgctgtattgagccgctgcatgcagcccct
gagcttaaagaccatcccattactcactactgcctgctggccatggcctcactcaccaag
atcctagtgattggactgaagccatctctaaaggtctggatgacttttccatacggcaag
acagaccctgccagcgtgccccagttggcatggcagtttgtagctgctcagaaagcagtg
aaccccatcctcgccttctgcagaggagacactgtccacttcctgctggtgaagaaggac
gaatctggaactgtccatgtcatcaaacagcgacagctccaactcaactgtgacattatc
agtctgacatggctgaatcctcgcacgctggtgttgatggacagcggagagaagctgcat
gcggtggaccggcccagtcaggaggagctggaaactctggacctggccgaggtgcagctc
gtgtacaacagcagtcattttaaatcgcttgctacagggggcaacgtcagccaggccctg
gctttagtgggagagaaggcgtgttaccagtctgtgtgcagctacggaggccagatcgtc
tacctgggaaccaaatccgtccatgttatgaccctgagaaactggagagagcgcgtcgat
catttactgaagcaggagaagtataccgaagcgctctctttagcctggtctttccatgag
ggcacagccaaagcggtattgggtctgttcggcgaccctgccaagcggaagggagtggtg
gctgacaagatggtggagatcttgttccagtatgtcgagcgctcgttaaagaagtgtccc
gagcagggcaagatccagctgctggagcagcacttccaggacatgattcctgtcatggtg
gattactgtctgcttctgcagaggacagacctgctgtttaaccagatctactcgaggctg
gttgagaactctgtggctaagggcgtcttcttggagagtctcgaaccgtacattctgagc
gagcggattggctgcctgacagcgcccgtcatgagggacctcctaagttacttccaagaa
aatggtatgatggagagtgtggagggctgcctggtgcacatggacatcaccaacctggat
atacagcaggtggtgcagatgtgttgggataaccagctctacgatgccatgatgtatgtg
ttcaacagtggcatgaacgattatatcagccccatggagaaactttttcaggtgattggt
cctcctctgcgagaaggcaaacctctcacagatgaacaggtggtcatgggaaataagctg
ctcgtctacattagttgttgtctagcaggacgagcctatcctttaggggacattccagaa
gaccttgtgccacaagttaaaaatcaggtgtttgagttcctgattcgcctgcattcgtta
gaagccatccaggaggaggaggtgtatccgtacatccggaccctgctgcacttcgacacc
cgcgagtttctcaacgttctagcgctgacgttcgaggattttaagaacgacaaacaggct
ctggagtaccagcaaaggatcgtggacattttactcaaggtcatggtggataactcggac
ttcacgccgtctcaggtgggctgcctgttcacctttctcgcccggcagctagccaaaccc
gacaacaccctcttcgtcaacaggaagttgtttgatcaggttctggagtttctgtgcagt
ccagacgatgattccagacacacggagaggcagcaggtgctgttggagttactgcaggtg
ggaggcatggtccagttcgacgaggggcggctcctcaccctggcggaaaaggcggaattt
tttcagatctgcgagtttttgtatgagcagaagcatctgtacgatcaaatcattgcctgc
tacctgaaggaccccttaagaaaggaggaggtttataactacatccataacatcctgtcc
atgcctggctacagcccagaggagaagcagaccacatggaacaaatccttagagcacatt
aaggagctggttagcattaaccctgcgaaagctgccgagctggtagcgggtcactttatc
agcgaggtcgggcctattatcaccgcactacaggatgatcatttggtgttccagttcctg
aggaagttgctggatccaagtgatggacagaagccccatgctgttaggaatcttgggcct
gagctccacgagctcctggtggacttgatgtgccgttttagtcctcgccaggtcacgcct
ttcctcgagacgtccgagagctaccgcctggaggagaccgtcaaaatcaccaagcagcac
gagctacatgaagccaccgcctacctgctggagaaaaaaggagatgtgcagggagccttc
caagtgctgctacagacactgaaggagaagctgaatacactcgttcaggagagttcagag
gcagccacgccgaggtctgcgagagaggaggaggatgtagattacaccccattggcgagg
gtggaggaagccctgaatgacatcatcacgctgtgccaccggagctcacatggacttaac
cagcagcagagagaggctctctggtttcctctcctagaggtgatgatgtctccacagaaa
ttcctaaaaggccctaatgccaaggatgtttctgatgccctgaaagagctcactatgaag
gtgttaaacaacatgtccagcttcatcgccctgcctgccatcatccagcgcatcctacag
gatccagtgtatgggaagggcaagttagcagagatccagggcctcattctgggcatgttg
gaaactttcaactatgaacagactctgctggagaccaccaccaatcttctgaattcggac
ctgcactggtctctggcccacctgcggaaggccgtcagcaggggactctaccctcgacag
gaccactgcaacatctgcctgcagcagtacaaaaggaggcaagagagtgaagaggagatc
atcatcttcagctgtggtcacctgtatcactgtcagtgcctacagcggaaggagcaatgg
gttgttggtaaagatcccggactcgcgggagatcgggttcactcgtggagctgttataag
tgcacttccagtcagggagctcgtcccggagaccgcctgctcgccgagggacgccgagtc
cgatccacttctctggcccagaccaaagtgacatccgtccatcggggaaccgccgccgag
actcatcacagaaaggagctgactgaagtgactttagacgcccagcagacgcaggcgtgg
gaccagctgcgctgcatgtacagaggaccctccagattggcgatccttacagaactcact
cactcccacagcagcgagagaaccggcctgctgaaccccgcccacccaggaacaggaagc
atctaccacagtgaaaacttcagcctcaagctttctccaccaccaatggtggaggagtag
DBGET
integrated database retrieval system
