Ictalurus punctatus (channel catfish): 108258962
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Entry
108258962 CDS
T04658
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108258962 (sox1b)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108258962 (sox1b)
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Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108258962
NCBI-ProteinID:
XP_017313520
UniProt:
A0A2D0Q827
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Position
26:complement(13014688..13017293)
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AA seq
344 aa
AA seq
DB search
MYSMMMETDLHSPAPQTNTSAGHTGQNAPGKLSQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLASSAGGGGVTLGMSTVQRLESPVGHGGGAGAASYAHVNGWANGAYTAAAAAA
MMQEAQLAYGQHASAGAAHHHGHHPHHHGHHHPHHQHAASAQSVHRYDMSALQYSPMSNS
PSYVSASPSAYAAMPYTQHQSSVSAAAGGVGTLGSLVKPEPSASPPLSAASRAPCPGDLR
EMISMYLPAAEAGDAAVQSRLHALPQHYQSTAAAINGTVPLTHI
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacttgcattccccggctccccaaacgaacacgagt
gcggggcacacgggccaaaacgctccggggaaactgagccaggagcgcgtcaagcgcccc
atgaacgcattcatggtgtggtcccgcgggcagcggcggaagatggcacaggagaacccc
aaaatgcacaactcggagatcagcaagaggcttggggccgagtggaaggtcatgtccgag
gcggagaagcggcctttcattgacgaggcgaagcgtctgcgcgcaatgcacatgaaggag
cacccggattacaagtaccggccacgcagaaagaccaaaacgctgcttaaaaaggacaaa
tactccctggccggcgggttgctcgctagttctgccggcggtggcggtgtgactctgggg
atgagcacagtgcagaggttagagagtcccgtgggtcacggcggcggagcaggcgcggcg
agttacgcacacgtgaacggctgggcaaacggcgcgtatacagcagccgccgccgcagcc
atgatgcaggaggcgcagttagcctacgggcagcatgcaagcgctggcgccgctcaccat
cacggacaccacccgcatcaccatggacaccaccacccgcaccatcagcacgccgccagt
gcgcagtccgtgcaccgctacgacatgagcgcactgcagtacagccccatgtcgaactct
ccgagctacgtgagcgcctcgccgtcggcctacgctgccatgccgtacacgcagcaccag
agctctgtctcggcggcggcgggaggcgtcggcacgctcggatcgctcgtgaagcccgag
ccgagcgcgagccctcccctcagcgccgcatcccgcgcgccctgtcccggtgatctgcgc
gagatgatcagcatgtacttaccggcggccgaggctggagacgcggctgttcagagcaga
ctgcacgcgctgccgcagcactatcagagcactgccgctgccattaacggaaccgtccca
ctgacgcacatttaa
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