Ictalurus punctatus (channel catfish): 108258964
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Entry
108258964 CDS
T04658
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03030
DNA replication
ipu03410
Base excision repair
ipu03420
Nucleotide excision repair
ipu03430
Mismatch repair
ipu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108258964
03410 Base excision repair
108258964
03420 Nucleotide excision repair
108258964
03430 Mismatch repair
108258964
03440 Homologous recombination
108258964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
108258964
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108258964
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
108258964
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
108258964
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
108258964
MMR (mismatch excision repair)
DNA polymerase delta complex
108258964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
108258964
NCBI-ProteinID:
XP_053531820
Ensembl:
ENSIPUG00000023099
UniProt:
A0A9F7QS58
LinkDB
All DBs
Position
2:complement(33044201..33060679)
Genome browser
AA seq
1105 aa
AA seq
DB search
MEFKRRNGGPSMGGASQAKRGKKGSEWEDGPSNFEEELALLDEIEMEMESVEGQAGHDVI
PVGDLFSADLNPRWRRPAAAPLRPDKDTLVFQQIDLDYYLGSAVAGMPGQVQGKVPVVRM
FGVTDSGNSVCCHIHGFAPYFYIPAPAGFTNSHLAEFQKELNSAVLKDMRSNKDNISVTV
LAVDITRKESMYGYHGKRPLDFLRITMAMPRLVAPAKRILEQGFKFAHFSIQSYSAYEAN
IDFEIRFMVDSDVVGCCWIELPKGKYKLREEKSTGETDSRDPDKVSLCQYEVDVGWTDLI
SHPTEGDWQRIAPLRVLSFDIECAGRKGVFPEAEVDPVIQIASMVQRQGEKEPFIRTVFT
LQSCASIVGSQILCFTQEKQLLQSWAEFVRTVDPDVITGYNIQNFDLPYLLNRAAALKVN
YFPYLGRMRGIRSVLKDSSFQSKQMGRRENKTVNMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQNLVMPVVKTEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGQAEKLGLSSEDFIKTPTGDLFVKSSVRKGLL
PEILENLLSARKRAKTDLKKETDPFRKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTFANGYPADAKVIYGDTDSVMVKLGVDTVQEAMSVGR
EAAEWVSSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFSSSSEHHDKMDCKGIETVRRDN
CPLVANLINMCLQKILIDRDPDGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTEY
YLEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSRVGGLMAFAQKRNTCIGCK
AVLKADTAMCDFCKKKESELYQKEIAHLSTLEEKFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLGDQEKLVSRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggagtttaagcggcgaaatggaggaccttcgatgggcggagcctctcaggccaagagg
ggcaaaaagggttctgagtgggaggacggcccatcgaactttgaagaagagctcgctctt
cttgacgaaattgagatggagatggaatcggtggaagggcaggcgggccatgatgtcatc
ccagtgggtgatttattttcagcggatctgaacccacgctggcgccgtcctgctgctgca
cctcttcggcccgataaagacacgctcgtcttccagcagattgacctcgactattatctg
ggttctgcagtggccgggatgcccggacaggtccaggggaaggttccggtggtccgtatg
tttggagtgaccgacagtgggaacagcgtctgctgtcatatacatggttttgccccctac
ttctacattcctgctccagccggcttcacgaattctcacctggcggagtttcagaaggag
ctgaactcggctgtgttgaaggacatgcgctccaacaaagacaacatctcggtcactgtg
ctcgcggtggacatcacgcgcaaagagagtatgtacggttaccacggcaagcgtccactg
gacttcctgcgcatcaccatggcgatgccgcgcctggttgccccggcgaaacgtatcctg
gagcaaggatttaagtttgctcacttctccattcagagttactctgcgtacgaggccaac
atcgacttcgagatcaggttcatggtggacagtgatgtggtgggatgctgctggatcgaa
ttgcctaaagggaagtacaaactaagagaggagaagagcacaggagagacggactcccga
gacccagacaaggtgtctctgtgtcagtatgaggtggatgttggatggacagatttgatc
agtcacccaacagaaggggactggcagagaatcgctcctctcagggtcctcagcttcgac
atcgagtgtgcaggcagaaaaggtgtgtttccggaggctgaagtggacccggtgattcag
atcgcctccatggtgcagcgtcagggagagaaggagccttttatccgcactgttttcacc
ttacagagctgtgctagtatagtggggtctcagatcctctgcttcacccaagagaagcag
ctactacagagctgggcggagtttgtgaggactgttgatcctgatgtcattaccggctac
aatattcaaaactttgacttgccgtacctgctcaacagagccgctgctttaaaggtgaat
tatttcccctatctgggtcgtatgaggggcatcaggtcggtccttaaagactccagcttc
cagagcaagcagatgggccgcagagaaaacaaaaccgtcaacatggagggcagagtgcag
tttgaccttcttcaggtcctgctgagggattataaactgcgctcgtacacactcaacgcc
gtcagtttccacttcctgcaggagcagaaagaggatgtccagcactcgatcatcacagac
ctgcagaatggaaatgagcagacgaggcggcgtctggctgtctactgtctgaaagatgcc
tacttgcccctgcgcttgctgcagaagctgatgtgtgtgattaactacatggagatggca
agagtgactggcgtgcccctgacctacctcctgtctcgaggccagcagattaaagtcgtg
tcccagttactacgacaggccatgaagcagaacttggtgatgccggtagtgaagactgaa
ggtggggaggattatacaggagctacagtcattgagccagagaaagggtactacagtgtg
ccgattgccactctggatttttcctcgctgtacccatccattatgatggctcataacctg
tgttacactacactactgcagaaaggccaagcagagaaactgggcctttcttcagaagac
ttcattaagactcctacgggagatctgtttgtcaaaagttcggtgaggaaggggctcctg
cccgagatcctggagaacctgctgagtgcccgtaagagggcgaagaccgatctgaagaag
gagactgacccgttcaggaagcaggtgttagatggcaggcagttggctttaaagatcagc
gccaactctgtgtacggtttcactggtgcccaggtgggcaaactgccctgtctggagatc
tcacagagtgttacaggcttcggcaggcagatgattgaacagactaagcagcttgtggaa
tccaaatacacgttcgctaatggatatccagctgatgccaaggtcatctatggagacaca
gactctgtgatggtgaaactgggagtggacacagtgcaggaggcgatgagcgtagggagg
gaggcggcggagtgggtgtcctcacacttcgttcccccgatcaagctggagtttgagaag
gtgtactacccgtatttactgatcaataagaagaggtacgctggcctgtatttctcctcc
agttccgagcatcacgataagatggactgtaagggaattgagactgtgaggcgagacaac
tgccccctagtggccaacctcatcaacatgtgccttcaaaaaatcctcatagaccgagat
cctgacggagctgtagctcatgctaaagaggtgatctcagaccttctgtgtaaccgcatt
gacatcagtcagctggtcatcaccaaggagttgacgcgcacggcgcaggagtacgcaggc
aagcaggcccacgtggaactcgccgagaggatgcgaaagcgggatgcaggcagtgctcct
aatcttggcgatcgagttccatatgttattatcaaggcagcgaaaggagtagcagcgtac
atgaagtcagaggaccctatttatgtgctagagaacaacatccctattgacacggaatac
tacctcgagcagcagctgtctaaacctctgctgcgcatctttgagcctatactgggagaa
accaaagctgagagtgttttactcaagggagatcacacacgctgtaagactgttctgacc
tccagagtgggaggcctcatggcctttgcgcagaaacgtaacacgtgcattggctgcaaa
gcggttctcaaagcagacactgctatgtgtgatttctgcaagaagaaggagtcggagctc
taccagaaagagattgctcacctgtccaccctggaggagaaattctctcgtctgtggact
cagtgtcagcgctgccaagggtccctgcatgaagatgtgctgtgtaccagtcgagactgt
cctatcttctacatgaggaaaaaggttcagaaagacctcggggatcaggagaagctggtc
tcgcgtttcggctggtga
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integrated database retrieval system
