Ictalurus punctatus (channel catfish): 108259022
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Entry
108259022 CDS
T04658
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108259022
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
108259022
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_4
UBA_N4BP1_C
zf-CCCH_2
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
108259022
NCBI-ProteinID:
XP_017313624
UniProt:
A0A2D0Q5N9
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Position
26:complement(10513496..10545471)
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AA seq
862 aa
AA seq
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MGLKDHLDDGAGHILDLGLDPDYLHVKAVDRQVGADALSRMDRGSLDTSEEGAPSSGRCP
SSSRGDSEDSCGSDGEVEQGCTLAPSDRSARAVHPPLCRSPCLDLDSPGLPEVTQDNPNT
ENSLREYQTKLEFALKLGYAEDLVQLVLSKLGSDALINDILGELVKLGSKSDNDSGATTS
STSTSLSLASSGSSSSSACSFSDSTDLRCSESPAQSILDDKDNLRPIVVDGSNVAMSHGN
KEVFSCQGIQLAVDWFLERGHKDITVFVPAWRKEQSRPDALITDQEILRRLEKDKILVFT
PSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLAVEKPEWKKFIDERLLMYSFVN
DKFMPPDDPLGRHGPSLENFLRKRPIIPEHKKQPCPYGKKCTYGHKCKFYHPERGTQPQR
AVADELRASAKTSAAKGTNESGLVKSHSVPGGSRNDKTGDGKRSHSKRQSDPSVRTLSYG
DVEDKLSSKTKADPQNSSLTLPPAPGGPPSCHTHTQDQREQLTCFSKSHAVPAFPQTDSY
PTCESPDLSYYSLVRGYSGLSLSTQRSPERPFLSDMDARLSSVASDCSSEGSASSDSYGT
VPPGERSCMSSPDSLLDDGLKCHHYHHLHHHRRQYPLPMFLPPPPNHHHQSRVLSPVPST
HPGYHHGMARGLSFTQDDQSPEPHFKHSVSYISPQVQHQMIGARSSCPGEYPPQSSPLSR
GLASTRLDSVSDSRLYERSPLLARKPFTDQERLASWEPYYQQPCYEPFTFQSLPENRQQA
WRVPWGQTPLHPSPPHPSHNPHQHQEPPVLGRYQESREKVFVNLCNIFPTELVRLVMGRY
PHVTDAQQLAAAILAEKSQAGY
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaaggaccatctggatgatggagcaggccacatcctcgacctggggctggat
ccggactatctccatgtgaaggctgtagaccggcaggtcggtgcagatgccctttccaga
atggacaggggctcattggacaccagcgaggaaggagcacccagctctgggagatgtcct
tcttcgtcccggggtgactctgaggacagctgtggatctgatggcgaggtggagcagggc
tgtactcttgctccaagcgacagatcagctcgagctgtacatccgccactttgccgctct
ccatgtctggatctggattccccagggctgccggaagtgacgcaggataatccaaacact
gaaaattctctaagggagtaccagaccaagttggagttcgctctaaagctaggttatgct
gaggacttggtccaattggtattaagcaagctcgggtcagacgcgctaatcaatgacatc
ctaggggagctggtgaaacttggaagcaagtcagacaatgacagtggcgcgacgacttca
tccacttccacttctttgtctttagcgtcttccgggtcatcgtcgtcttcagcatgtagc
ttctcagactcgaccgatttgcgatgctctgaatcgccagcacagtcaatcctggatgac
aaggataacctacgccccatagttgtggatggaagcaatgtagccatgagccatggcaac
aaggaggtgttttcttgccaaggtatacagcttgcagtggactggttccttgaacgtggc
cacaaagacatcacagtattcgtaccagcgtggagaaaagagcagtcccgacctgacgct
ctcatcacagatcaagagatcctgaggcgactggagaaggacaagatcctggtcttcaca
ccctctcgccgggtccaggggcgtagggtggtgtgctacgatgaccggttcatcgtcaag
ttggcttacgaatcggatggcatcattgtctccaatgacaactacagggatttggccgtg
gaaaaaccagagtggaagaagtttattgacgaacgacttctcatgtactcgtttgtcaat
gataagttcatgcctcctgatgatccccttggtcggcatggccccagccttgagaacttc
ctgagaaaaaggcctatcatcccagaacacaaaaaacagccttgtccatatggaaagaag
tgcacttatggtcacaagtgcaaattctaccacccagagcgtggcacccagccccagcgc
gccgtagccgacgagctgcgtgctagtgccaagacctctgcagccaaaggcacaaatgag
tccggccttgtgaaaagccacagtgttcctggaggctctcgtaatgataaaaccggtgac
ggaaagcgttcacactcaaagcggcagtcggaccccagtgtccgcaccctttcatacggt
gacgtggaggacaagctgagctccaaaaccaaagcagacccccagaacagcagcttgacc
ctaccccctgcaccaggtgggcccccttcctgccacactcacacacaagaccagagagaa
cagctgacatgcttttccaaaagtcacgcagtgccagctttccctcagacagactcctac
cccacctgtgagtctccggacctcagctactactcccttgttcgtggctactctggcctc
agcttgtccacccaaaggagcccagagcgacctttcctttctgatatggatgcacggctc
agttccgtggcatctgactgcagcagcgagggcagcgccagctctgattcgtatggcacg
gtgcctcctggtgagcgctcctgcatgagctcgcctgactcactgttggacgatgggctc
aagtgtcatcattaccaccacctccaccaccaccgcaggcagtacccgctgcccatgttc
ctgcctccaccacccaaccaccaccaccagagccgtgtgctctccccagtcccttcgact
cacccagggtaccaccacgggatggcccgcggactcagcttcacacaagacgaccagtct
ccggagccccacttcaagcactcagtgtcatacattagcccacaagttcagcaccagatg
atcggtgcaagatccagttgtcctggagagtaccctcctcagagttccccactgagtcgc
ggactggcatccacacgtcttgacagcgtgtctgactccaggctctatgagcgttcaccc
cttttggccaggaagcccttcacagaccaggagaggctggctagctgggagccatactat
cagcagccctgctatgagccattcacctttcagagcctcccagaaaacaggcagcaagca
tggcgggtgccttggggacaaactcctcttcatccttcgcctcctcatccatcccataat
ccccaccagcaccaggaaccacctgtcctcggtcgctaccaggaatcgcgtgagaaagtg
tttgtcaacctgtgcaacatctttcccactgagcttgtgcgcctggtcatgggccgttat
cctcacgttaccgatgcccaacagctggcagccgctatcttggctgaaaagagccaggct
ggatactaa
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