Ictalurus punctatus (channel catfish): 108259057
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Entry
108259057 CDS
T04658
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03410
Base excision repair
ipu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108259057
03450 Non-homologous end-joining
108259057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108259057
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
108259057
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
108259057
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
108259057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
BRCT
BRCT_2
HHH_5
HHH
NTP_transf_2
LIG3_BRCT
PTCB-BRCT
HHH_3
Motif
Other DBs
NCBI-GeneID:
108259057
NCBI-ProteinID:
XP_017313679
Ensembl:
ENSIPUG00000022704
UniProt:
A0A2D0Q5U3
LinkDB
All DBs
Position
26:complement(15045532..15053983)
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AA seq
565 aa
AA seq
DB search
METHGIMKAFPKVKRHRPHEGKDAPPVKKHPGQPVTGNIFQGVCVHIVPAGIGNARCDIF
QQQIVQNGGQVEAAYGPSCTHVVVDESVDRERASRLLKMETFPPAVQLVKCTWLSACISE
KKLLSTKDYRLHPCNRPQDAPAEEPKQIAVSCIPVPEETQPPDHKSAQDDPADVCSTGAP
QVPETQEEPLEEDVVSQNDLEALISGVKHDPGASDDTRNVSEKTNVLGKWVCAQSSQTKS
KNHNNHITDKLEQLAKVYTHTGDKWRALSYSKAVNALKSHHKPISSYEEAYKIPGIGKSM
ANKIVEIMESGHLRKLDQFGEALPVLELFTNIWGVGAKTAQLWYQQGFRTLEDIRTKATL
THTLRIGLKHYDDFLERMPRSEAAAIEKTVREAAHSVNPELLVVACGSYRRGKPTCGDVD
VLITHPDGQSHKGVFSKVLQKLHQSGFLTDDLVSHEENGEQKKYMGVCVLPGPGQRHRRL
DVIVVPHDEFACAILYFTGSAHFNRSMRALAKTKAMSLSEHSLNAGVVRKRSVKVVPGLP
LSTPTERAVFEHLGIPYREPHERDW
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggagactcatggtattatgaaagccttccccaaagtgaagagacaccggccacatgag
ggtaaagatgctcccccggtcaagaaacatccgggtcaacctgttactgggaacatattt
cagggtgtctgcgtccacatagtccctgctggcataggaaatgcccggtgtgacatattc
cagcagcagatcgtgcagaatggaggccaggtggaagctgcttacggacccagctgcacg
cacgtggtcgtggacgagtcggtggacagggaacgagcgtcaaggctgctgaagatggaa
acctttccccctgctgtgcagctggtaaagtgcacttggctcagtgcttgcatctctgag
aagaagcttctgagcacaaaagactacaggcttcatccatgcaaccgtcctcaggacgct
cccgctgaggagccaaagcagattgctgtcagttgcatccctgttcctgaggaaacgcag
ccaccggatcacaaatcagctcaagatgatccagctgacgtgtgctccacaggtgctcca
caggtgcccgagactcaggaagaacccctagaggaagacgttgtgtcacagaacgatttg
gaggctctgatcagcggggttaaacacgatcctggtgcttcagatgacacgcggaatgtg
tcagaaaagacaaacgtgttgggaaagtgggtgtgtgcccagtcgtctcagacaaagagc
aagaaccacaacaatcacatcactgacaagctggagcagctagccaaagtgtacacacat
acgggtgacaagtggagggcgctgagctactcaaaagcagttaatgccctcaagagccat
cacaagccgatctcttcatatgaggaagcctataagatcccaggcatcggcaagagcatg
gccaataagattgtggagatcatggagagtgggcacctgagaaagctggaccagttcggg
gaggctctgcccgtcctggagctgttcaccaacatctggggtgttggcgcgaagactgcc
cagctttggtaccaacaagggtttcgtacgctggaggatattcgcaccaaggccactttg
actcacacgctgagaattggcctgaaacactacgacgacttcctcgaacgtatgccaaga
agcgaggcagccgccatcgagaaaacggtgagagaggcagcacacagcgtgaacccagaa
ctgctggtggtggcgtgcggctcgtaccggcgcgggaagcccacatgtggagacgtggac
gtgctcatcactcatccagacggccaatcgcacaagggcgtctttagcaaagtgctccag
aaactccatcagagcggcttcttgactgacgatttggtgagccacgaggagaacggcgag
cagaagaagtacatgggcgtatgtgtcctgccaggcccaggtcagcgccatcggaggctc
gatgtcattgtggtgccacacgatgaattcgcatgcgccattctgtatttcaccggctca
gcccatttcaaccgctccatgcgcgcactcgccaagacaaaagccatgagtctgtcagaa
cactctctgaacgccggcgtggtgcgcaagcgtagcgtgaaggtggtaccaggtttgccg
ctgagcacacctactgagagggcggtctttgagcacctgggcatcccatacagagaacct
catgagagagactggtag
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