Ictalurus punctatus (channel catfish): 108259086
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Entry
108259086 CDS
T04658
Symbol
lmo7b
Name
(RefSeq) LIM domain only protein 7b isoform X1
KO
K06084
F-box protein 20
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108259086 (lmo7b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108259086 (lmo7b)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108259086 (lmo7b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108259086
NCBI-ProteinID:
XP_017313754
UniProt:
A0A2D0Q622
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All DBs
Position
26:complement(16458411..16491160)
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AA seq
1139 aa
AA seq
DB search
MEWREQTAVGCEVAFSEAQRWMEEVTKKRFGSSNFRSALENGVLLCDLINKLKPGIIKRV
NRLSTPIAGLDNVNVFLKACEKLGLNDSQLFHPGDLQDVSTRVTVRHQETSRRLKNVLIT
IYWLGRKAQADPSYSGPQLNFKAFEGLLGVALSKALEEASGSKSSVRDSFFAETWYPDSE
VLSYRREDSVESVDSVESHTLSVVSDCTLIAGSEGFGSDAEAEHCFRMTEPLPAPGRERR
NVPPALRRKRFEPHEGGRGRIGPLHRVPTGRSPCVGSKSMSDIATEPVAQEAESSTLFLH
LKSQRSKTATVSMQTRLYQARLRESEAKWQEDLNRWKTRRQSLNSDLHKKKEEREQLELL
TSATALDVEEQKQSPCRRSLRGENPDLASMATHEAFAPSPLTSRCSSMPVPVSSTGPVPV
RRDCFRATGTIDASHHTPPVVSAASDHLQSSSSTSLPASDTDSAQVPVQCAKSLEGVYSG
TPQMSASLPRGFRRSEGTSRLSTGVTPRPFCTKTSRRSTQPRFYPTDDSHNDRRERHQLP
GSFPRQETDTTSDYKDGTRSSTHAAVRQRKKEEEERGKRMDSAPSVHSFMSASVLMPDKT
VSASEEDEVDHRDMRVSLNQTPDSGTDFGFQIRWDSTGAHIKSVQPGSPAQLCHLQAGDE
IVALGGQRVAEMSYEQWKANMDAALREGKLLMDIRRLSLNGHPDQHTSSLAVENETKAQV
NGHPVNGLTSKVTNRSFRDNVVLTKNKGGSESAISDLLVPSIGASSSSRWSWNAEEERRR
QEKWQMEQEHLLQEKYRRDQERLEEAWRRDQQDAALEENSGPEKQEVPALPSGNITHYSP
APFLHRSNSPTLVAPAQQAQEAALVLNKQVQIAASHPTREECDSSSKTSQWPSESYGFTK
LSASYRKKSKSTPSLDGSHKQESRAEAGVKKAGRTSQAEQERLQILDEMRKKTPVLTDSS
WIRQRSTSTVHKEPVSVAPLRRHESLDNIRSSSSSSPQFSSSSQPLSGLSGIVPYRAYSG
RCSLGPGAAIFSKALRQSSWSRLSSISPASVAEEACNRADQHDSASAAGLSSGETRSPEL
RCESGTDSSSVTPVATVSKRISVSPQSVPAFRSDHDASLQITEKTFPEDDSDTATASSA
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggagtggagagagcagacggcagtcggctgtgaggtggcgttcagcgaggcacaacga
tggatggaggaagtgacgaagaagaggttcgggagcagtaactttagatctgccctggag
aacggagtcttgttgtgcgatctgatcaacaaactcaagcctgggatcatcaagagagtg
aacagactctccacccccatcgccggattagacaacgtgaatgtgtttctgaaggcctgt
gaaaaactcggactcaacgactcgcagctcttccaccccggagacttgcaggacgtgtcc
acccgcgtgaccgtcaggcatcaagagacatccaggagattgaaaaatgttctgatcacg
atatactggctgggaaggaaggctcaggccgacccgtcctacagcggaccacagctcaac
tttaaagcgttcgaaggtctgctgggcgtcgccttatccaaagctctagaggaggcctcg
ggctccaagtccagtgtgagggacagtttttttgcagagacctggtaccctgacagcgag
gtactgagctacaggagggaagattcggtggagtccgtagactccgtggagtcgcacact
ctgagtgtggtgtcggattgtacgttgatcgcaggcagtgaagggtttgggagcgacgca
gaggcagagcactgctttaggatgactgaacctctgcctgcccctggtagagagagacga
aacgtcccgccggcactgaggaggaaaagatttgagccacatgaaggtggcagggggcgt
atcggcccgctccacagagttcccacgggacgttcgccttgtgtcgggagcaagtccatg
agtgacatcgccaccgagcccgtagctcaggaggctgaaagcagcacgctttttcttcac
ctgaagagccaacgcagtaaaactgccacggtttctatgcagacgcggctgtatcaggcc
aggctgagggagagcgaggccaagtggcaggaggacctgaacaggtggaagacccgaagg
cagagcttgaactcggacctgcacaagaagaaagaggagcgagaacaactcgagctcctc
accagtgcgactgcgctagacgtagaggagcagaagcaaagtccttgtaggaggagccta
cggggggagaatcctgacttggcctctatggctacacacgaggccttcgctccttctcca
ctgacctcccgctgtagcagcatgccggttcccgtaagctcaactggacccgttcctgta
cgcagggactgttttcgtgctactggtacgattgacgcgagtcatcacacacctcctgta
gtgagcgcagcgtccgatcacctgcagagctcctcatccacctccctgccagcctcggat
acagactccgctcaggtgcccgtccagtgcgccaagtctctagagggtgtgtattcgggt
acgccgcagatgtccgcctcgctgcccagaggtttccgcaggtcagagggcacctcacgg
ctctccacaggcgtcacacctagacccttctgcaccaagacctccaggaggtctactcag
cccagattctaccccacggacgattcccataacgaccggcgagagcgacaccagcttcct
ggatctttcccccggcaagaaaccgatactacatctgattacaaagatggcactcgctct
agtacgcacgcggccgtccggcagaggaagaaggaagaggaagagcggggaaagcggatg
gactcggctcctagcgttcactcgttcatgtccgctagtgtcctgatgccagataaaacc
gtgtctgcgagcgaggaggacgaggtggatcaccgtgacatgcgagtcagtctgaatcag
acgcccgacagcggcacggacttcggctttcagatccgttgggactcgactggcgctcac
atcaaatccgtccaaccaggcagcccggctcagctgtgccacctgcaagcgggcgatgag
attgtggctttgggtggacagcgagtggccgaaatgagctacgaacagtggaaggccaac
atggatgccgcgctgcgagagggcaagctgctgatggacatccgacgcctcagccttaac
ggtcatccagatcagcacacctccagcctggccgtggagaacgagactaaagcgcaggtc
aacggccatcctgttaatggtttgacatcgaaagtaacaaataggagtttccgtgacaac
gtggtcctgacaaaaaacaaaggaggctccgagtcggccatatcggatctgctggttccc
tccatcggcgcgtcgtcatcctcacgctggtcctggaacgcggaggaggaaaggaggaga
caggagaaatggcagatggagcaggagcacctcctgcaggagaagtacaggcgtgatcaa
gagagactagaagaagcatggagacgagatcagcaggatgcagcattagaagaaaacagc
ggccctgagaagcaggaagtgcccgctttgcccagtggaaacatcacgcattactctcca
gcccctttcctccaccgatcaaattcgccaactcttgtagcacccgctcagcaagcgcaa
gaggcggcgctcgtcctgaacaaacaggtccaaatagcggccagtcatccgaccagggag
gagtgcgattcctcctcaaagacaagtcaatggccgagcgagtcttacggatttaccaag
ctatcggcttcgtacaggaaaaagtccaaatccactccctcacttgatggcagccacaag
caagagtctagagctgaagcgggcgttaagaaggccggtcgcacgtctcaggccgagcag
gagcgtctgcagatcctggatgagatgaggaagaagactccagtccttactgacagcagc
tggatccgccagcgcagtacctctaccgtccacaaggagccagtcagcgttgcaccactg
agaagacacgagtctctggacaacatccgcagcagcagctcctcgtctccgcagttctcc
agctcgtctcagcctctttcgggcctgagcggcatcgttccttaccgagcttactcgggc
cgctgcagcctgggccccggtgctgccattttctccaaggctttaaggcagagctcctgg
tctcggctctcctccatctctcccgcgtctgttgctgaggaggcgtgtaaccgagcagat
cagcatgacagtgcgtcagctgcaggactgagctcaggagagacccggagtccggagctc
aggtgcgagtcaggcacggacagctcttctgtgacacctgttgcaacagtctccaagcgg
atatccgtttctccccagtccgtaccggcattccgaagtgatcatgatgcgtcgctgcag
atcacggagaagactttccctgaagatgattcggacacggcaaccgcaagctcggcataa
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