Ictalurus punctatus (channel catfish): 108259192
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Entry
108259192 CDS
T04658
Symbol
sin3ab
Name
(RefSeq) paired amphipathic helix protein Sin3a isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108259192 (sin3ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108259192 (sin3ab)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108259192 (sin3ab)
REST complex
108259192 (sin3ab)
Heterochromatin formation proteins
Other heterochromatin formation proteins
108259192 (sin3ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
MKRN1_C
Motif
Other DBs
NCBI-GeneID:
108259192
NCBI-ProteinID:
XP_017313903
Ensembl:
ENSIPUG00000021061
UniProt:
A0A2D0Q6H0
LinkDB
All DBs
Position
27:10098923..10128778
Genome browser
AA seq
1267 aa
AA seq
DB search
MKRRSDDQETAFGSQRRLPGGAESFHHRVVAAASSVYGAASENMQPAAGVQYSQVPQTFQ
VPLAQSSGGHGHSDSPAVHAGAHHHGPVVQPTGAALGQGHSHAPPASAPTPGQQQFQRLK
VEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKGHPDLIMGF
NTFLPPGYKIEVQTNNMVNVTTPGQIHHITPHGVSVQNIPITQQAQHQSQTSAPTSTAAL
PMPSQPTPAKISKPMQSPALTPTSQHNPSIPSYASPRSPSVQSHTPVSSTPASAPPLQNN
QPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVY
AQVARLFKNQEDLLSEFGQFLPDANSSVLLGKTSTDKPESVRMDPSSVLKRPQLNNNKQR
FNQNGCQIRRHSGPGATPPLKKKPKFMGKEHPVAEGSKFGIGTESLFFEKVRKALRSTEA
YDNFLRCLVIFNQEVISRAELVQLVLPFLGKFPELFTWFKNFLGYKECAQMESFPKERAT
EGIAMEIDYSSCKRLGFSYRALPKSFQQPKCTGRSPLCKEVLNDTWVSFPSWSEDSTFVS
SKKTQYEEHIYRCEDERFELDVVIETNLSTIRVLETVQKKLSRMSAEEQAKFRLDNTMGG
SSEVIHRKAIQRIYGDKAADIIDGLKRNPAVSVPIVLKRLKMKDEEWREAQRGFNKIWRE
QNEKYYLKSLDHQGINFKQNDTKVFRSKTLLNEIETQYDERQEASDDNGSSPSGPHMTLP
YEDGQILEDAAALIIHHVKRQSGIHKDDKYKIKQVIYHFIPDMLFARRGELSDVEEEEEE
EEPDPDEDGAKKPNGTTQPKSKLLFSHTTPAQQKLSTCDEAYNLFYVNNNWYVFLRLHHM
LCSRLLRIYNQAEKQIEEETREREWERNVLGLKREKNDSPAVQLRLREPLDIDVEDYYSA
FLEMVRNLLDGNMETSQYEDQLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVT
DLYLTECSNKATGGTTSTQSSRTSAEASYQRKAEQLMAEENCFKLLFQKSKGSVQLAVEL
LDTEEENSDEPMEFERWQDYVESYVNADSASPELREQLSQKPVFLPRNLRRVRKCQRGQH
VQMREASEAAKKTADGAEDPKMECMFKLNSYKMVYVIKSEDYMYRRTALSRAHQSHQHVS
TRLHQRFQTWLDAWRKDHVANELATDNHKWLMGESQEGLRACKTSCEPCILHFQSINRYR
VTYSSTP
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcgctcggacgatcaggaaacagcgtttgggtctcagcggcggcttcccgga
ggcgcagaaagctttcatcaccgtgttgttgctgctgcatcttccgtatacggggctgcc
tcagaaaacatgcagcctgctgctggtgtgcagtactctcaggtccctcagacttttcag
gtgcccttggctcagagctctggaggacatggacacagtgacagtcctgcagtgcacgct
ggcgcacatcatcacggccctgtggtccagcctacaggagctgccttaggtcagggtcac
tctcatgccccgcctgcttctgctccaacaccaggccagcagcagttccagaggcttaag
gtggaagacgctctttcctaccttgatcaagtgaagctccaattcgggaatcagccacaa
gtttataacgatttcctggatataatgaaagagttcaaatctcaaagcatcgatacacca
ggcgtgattaacagagtgtcgcagctgtttaagggccatccagacctcatcatgggcttc
aataccttcctgccccctggctacaagatagaagtgcagactaacaacatggtgaacgta
acgaccccaggccagatccatcacatcaccccgcatggcgtttcagtgcagaacatcccc
ataacgcagcaggctcagcaccagagccagacttcagcccccacaagcaccgctgctctc
cccatgcccagccagcccacacctgccaagatcagcaagcccatgcagtctcctgctctg
accccaaccagccagcacaatccgtccatcccatcctacgcctcgccccgctccccctca
gtccagtctcacacaccggtgagcagcacacctgccagcgctcctccgctgcagaacaac
cagcctgtggagttcaatcacgccatcaactatgtcaacaagatcaaaaaccgctttcaa
ggccaaccagatatctacaaagcatttctggagattctgcacacgtaccagaaagagcag
cggaatgcaaaggaagcaggtgggaactacactccggctcttactgagcaggaagtgtat
gctcaagtagccaggcttttcaagaaccaagaggatctgttatccgagttcggacagttc
ctgccagatgccaacagttctgtgttattgggcaaaacgagcacagataagccagagtct
gtgcgcatggatcccagcagtgttttgaagaggccacagctcaacaacaacaagcagaga
ttcaaccagaatggctgccagattcgtagacactctgggcctggtgctactcccccttta
aagaagaagccaaagtttatggggaaagaacacccagtggctgaaggcagcaaatttgga
atcggcactgaatctttgttttttgaaaaggtgaggaaagcactaagaagcacagaggcc
tatgacaatttcctgcgttgtttagtgatcttcaaccaagaggtgatctcgagagcagaa
ctagtgcagctggtgctacctttcttagggaaattcccagagctgtttacttggttcaag
aattttctgggctacaaagagtgtgcccaaatggagagctttcccaaagagcgtgctacg
gagggcattgctatggagattgattattcttcctgcaagagactgggtttcagttacaga
gctctgcctaagagcttccagcagcccaaatgcacaggaagatctccactctgtaaggag
gttctgaatgacacgtgggtgtctttcccgtcttggtctgaggactccacttttgtcagc
tccaaaaagacacagtacgaagagcacatatacagatgtgaggacgagcgctttgagctc
gatgtggtgatcgagacaaacctgtccactatccgtgttttggagaccgttcagaagaaa
ctctcgcggatgtcagcagaagaacaggccaaattcaggttggacaacaccatgggaggc
tcctcagaggtcattcaccgcaaagccattcagaggatatatggggacaaagctgcagac
atcattgatggtctcaagagaaaccctgcagtctctgtaccgattgttctgaaaagactc
aaaatgaaagacgaagagtggcgcgaggctcaaagaggctttaacaagatctggagggaa
cagaatgagaagtattacctcaagtcattggaccaccagggtattaacttcaaacagaac
gacacaaaagtgttccgctccaagacattgctcaacgagatcgagactcagtatgatgag
cggcaggaggcatcagatgacaacggctcctctccgtcgggccctcacatgactctgcct
tatgaagatggtcagatcctggaagacgcagctgccctcatcatccaccatgtcaagagg
cagtccggcatccacaaggacgacaagtataagatcaagcaggtcatctaccacttcatc
cccgacatgctgttcgcccggcgcggcgagctgtccgacgtggaggaggaagaggaagaa
gaggagcccgatcctgatgaagatggagcaaagaagcctaacggtacaactcagcccaaa
tccaagctgctgttcagtcacacaacgccggcgcagcagaagctcagcacttgcgacgag
gcctacaacctcttctacgtcaacaacaactggtacgtcttcctgcggctgcaccacatg
ctgtgctccaggctgcttcgcatctacaaccaggctgagaaacagatcgaggaggagacc
agggagagggagtgggagcgcaatgtgctagggctcaagagagagaagaatgacagtcca
gctgtccagctgcgcctgagggaacccctggatattgacgtcgaggactactactccgcc
tttctggagatggtgcgcaaccttctggatggcaatatggagacatctcagtatgaggac
cagctgagggagatgttcaccatccacgcctacatcgccttcaccatggacaagctcata
cagagcatcgtcaggcagctccagcacatagtgagtgatgagatctgtgttcaggtgaca
gatctttacctcactgaatgttccaataaagcaacaggtggcaccacatccactcagtca
tccaggaccagcgccgaggcgagctaccagcgcaaagctgaacagctaatggcagaggag
aattgcttcaagctactgttccagaagagcaaggggagtgtacagctggctgtagagctg
ctggacactgaggaggagaactctgatgagcccatggagtttgagcgttggcaggattac
gttgagagttacgtgaacgcggactcggcgtccccggagctgagggagcagctctcccag
aagcctgtgtttctgcccagaaacctcaggcgggtcaggaagtgccagcgagggcagcac
gtccagatgagagaagcgagcgaagcagctaagaaaaccgccgatggtgcagaggacccc
aaaatggaatgcatgtttaagctcaactcgtacaagatggtgtacgttattaagtcagag
gattacatgtacaggcgcacagcgctctcgagagcccatcagtcccaccagcacgtcagc
acacgtctgcaccagcgtttccagacctggctagacgcatggaggaaagatcacgtggcc
aatgagctggccaccgacaatcacaagtggcttatgggagaaagccaggaggggctgcgg
gcctgtaaaacgagctgtgaaccttgtatccttcacttccagagcatcaacagataccgg
gtcacctacagcagcactccataa
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integrated database retrieval system
