Ictalurus punctatus (channel catfish): 108259330
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Entry
108259330 CDS
T04658
Symbol
lrrc4cb
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108259330 (lrrc4cb)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
Ig_3
I-set
LRR_14
ig
LRR_9
V-set
Ig_2
LRRNT
LRRCT
Syndecan
Motif
Other DBs
NCBI-GeneID:
108259330
NCBI-ProteinID:
XP_017314213
Ensembl:
ENSIPUG00000022604
UniProt:
W5UDF3
LinkDB
All DBs
Position
27:complement(9147180..9177183)
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AA seq
631 aa
AA seq
DB search
MLNKMTSYHQHQMMRGPRWKGAWFDPLFLLLLALQLLAVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLREVPDGISTNTRYLNLQDNLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLTSLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRLPSLRRLDL
GELKRLSYISDGAFEGLSNLRYLNMGMCNLKEVPNIRPLVRLDELEMSGNQLTVIQPGSF
KGLIHLQKLWMMHSQIQTIERNSFDDLQSLSELNLAHNNLTFVPHDLFTPLRHLQRVHLH
HNPWNCNCDILWLSWWLRETVPTNTSCCARCNSPASLKGRYIGELDQSYFQCYAPVIVEP
PADLNVTEGIAVELKCRTNSLTSVSWLTPGGSIMTHGASQARVMVQNDGTLNFTRVTMHD
TGNYTCMVSNMLGNISASAVLNVTSIDNSGFSYFTTVTVETIEPPTDGLSRTPEQSSFGW
VASSTTRATPISTEKAYTIPVTDVDNEGALNGLEEVMKTTKIIIGCFVAITLMAAVMLII
FYKMRKQHHQQDHNGPTRTMEIISVDDELAGVPAMESHLPLPPLEHDHYNHYNSYKSAYN
HASTLGSLHSSVHEPLLIQASSKDNVQETQI
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgacctcttaccatcagcaccagatgatgagaggtcctagatggaaa
ggggcttggtttgaccccttgttcctcctgctcttggctctgcagttacttgcagtggca
ggattagtaagggcccagacatgtccctctgtgtgttcctgcagcaaccaatttagcaag
gtcatatgcacacgcagaggactcagggaagtccctgatggcatctccaccaacacacgt
tacctgaaccttcaggacaatcttatccaggtcatcaaagtggacagtttcaagcatcta
cggcatttagaaatcctccaacttagcaaaaatcatatccgcaacattgagattggcgcc
ttcaatgggctaaccagccttaacaccctggagctctttgacaatcgcctcacaacgatc
ccaaatggagcttttgaatatctctctaaactcaaagaactatggcttaggaataatcca
attgagagcataccatcctatgctttcaaccgattaccatccttaaggaggctggacttg
ggggagctcaaacgtctctcctatatctcagatggagcatttgagggcttaagcaacttg
cgctacctgaacatgggaatgtgtaacctcaaggaggtccccaacattaggcccttagtt
cgtttggatgagcttgagatgtcagggaaccagctgacggtgatccagcctggttcgttc
aagggtcttatccacctccagaagctgtggatgatgcattcccagatccaaacaattgaa
aggaactcttttgatgaccttcagtcattaagtgagctgaacctggctcataataacctc
acatttgtgccccatgaccttttcactcctttacgccatttgcagagagtacacctacac
cacaatccctggaattgcaactgtgacatcctgtggttaagctggtggctaagggaaacc
gtaccaactaacaccagctgctgcgctcgctgtaactctcctgcaagcctcaaggggcgc
tacattggtgagctggaccagagctactttcaatgttatgcacctgtcattgttgagcct
cctgcagatcttaatgttactgagggaatagcagtggagctcaaatgtcggacaaattct
ctgacctcagtcagttggctaacaccaggtggctccattatgacacatggggcatcccag
gcacgtgtcatggtgcaaaatgatggaacactgaacttcaccagagttacaatgcatgac
acggggaactacacctgcatggtcagcaacatgctgggaaacatttccgcttctgcagtc
ctcaacgtgacctctatagacaacagtggtttcagttacttcaccacagtcactgttgag
actattgagcccccaactgatgggctgagtaggacccctgagcaatcttcctttggctgg
gtggcatcatcaactacaagagcgaccccaatttccacagagaaagcctataccatccct
gtgacagacgtagacaatgagggagctctcaatggtttggaggaggtaatgaagaccacc
aagatcatcatcggctgcttcgtggccatcacactcatggctgccgtcatgctcatcata
ttctacaagatgagaaagcagcaccaccagcaagatcacaatgggccaactcgcacaatg
gagatcatcagtgtagatgacgaactggcaggggttcctgcgatggaaagccacctccct
cttcctccattggagcacgaccactacaaccactacaactcatacaagagtgcttacaac
cacgcctcgacactcggctcactacatagctctgtgcatgaacctttactaatccaagcc
agctcaaaagataacgtgcaagagacacaaatttga
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