Ictalurus punctatus (channel catfish): 108259335
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Entry
108259335 CDS
T04658
Name
(RefSeq) U1 small nuclear ribonucleoprotein 70 kDa
KO
K11093
U1 small nuclear ribonucleoprotein 70kDa
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108259335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108259335
Spliceosome [BR:
ipu03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
108259335
Complex B
108259335
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
U1snRNP70_N
RRM_1
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
108259335
NCBI-ProteinID:
XP_017314222
Ensembl:
ENSIPUG00000013994
UniProt:
A0A2D0Q7E5
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All DBs
Position
2:complement(35960386..35971392)
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AA seq
513 aa
AA seq
DB search
MTQFLPPNLLALFAPRDPIPFLPQLEKLPHEKHHNQPYSGIAPFIKHFEDPRDAPPPTRA
ETREERLERKRREKMERRQTVVETELKLWDPHNDPNAQGDAFKTLFVARINYDTTESKLR
REFEVYGPIKRIYIVYNKRTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
GRTVKGWHPRRLGGGLGGTRRGGADVNIKHSGRDDTSRYDDRPIGSDRDRERGERRERSE
RSERSREPDREKERGERRRSRSRERRRRTRSRERERALGGGGEEGAGRRRERERERGGGG
GGGGGGGGGGDADAKPRERSRERDRDRERKRRSRSRERRRDRERGKGAEGGEEGAGGLTD
GMMGEGGERGMDESALGEQGRGDEGGPEGEERSRDRDRERDRDRDRKRSHRDKDRDRDRE
RRRDRDRDRDREHKRDRGDRERREDRHGTLLPSMGENEGLGNGEEGDSSLPPQPEEGSQD
GMNAMMDQDSMQSGDGYASNENGYKMEAQGDEY
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgactcagtttctgcccccgaacctgctggccctgtttgccccgcgggatccgatcccg
ttcctgccacagctggagaaacttccccatgagaagcatcacaaccagccatactccggc
attgctcctttcatcaagcactttgaggatcctcgagatgctcctccaccaacaagagct
gagacgcgagaggagagactggaaagaaagaggcgcgaaaagatggagaggaggcaaacg
gtcgtagaaaccgagctgaagttgtgggatcctcacaacgacccgaacgcacaaggagac
gctttcaagaccttattcgtggctcggattaattacgatacgactgagtccaaactgcgg
cgtgagtttgaggtctacggccccatcaaacgaatctacatcgtatacaacaagaggact
ggaaagccacgcggctacgctttcatcgagtacgaacacgagcgggacatgcattcggcc
tacaagcatgcggacggcaaaaagattgacgggcgcagagttcttgttgatgtagagaga
ggccgtaccgtgaagggatggcaccctcgtcggctgggtggaggtctgggtggtactagg
agaggtggagcagatgttaacatcaaacattctggtagagatgacacctcccgctatgat
gaccgacctattggaagcgatagggatcgtgagcgcggagaacggcgagagcggagtgag
cggagcgagcggagccgcgaacccgacagagaaaaggagcgtggcgagcggcggcgatca
cgctcacgggagaggcgacgacgcacccgatcacgtgagcgtgaaagggcacttggggga
ggtggggaagagggtgccggccggcgcagggaacgagagagggagagaggtggaggtggt
ggaggtggaggtggtggtggtggtggaggagacgcagacgccaagccacgtgaaagaagc
cgagagcgtgaccgggaccgagaacgcaaaagaaggagcaggagcagggagaggaggagg
gacagggagcgagggaagggtgcggagggaggtgaagagggcgcaggcggtctgactgac
ggcatgatgggagaaggaggagagcgagggatggacgagtctgccttgggtgagcagggt
cgaggagatgagggaggaccagagggagaagagcgaagcagagatagagacagagagagg
gacagggaccgggacaggaagcgtagtcaccgagataaagatagagaccgggacagagaa
aggaggcgggacagagaccgagaccgagatcgcgagcacaagcgagacaggggtgatcgc
gagcgtagagaggatcgacacggcactctacttccctctatgggtgagaacgaaggcttg
gggaacggagaagaaggggacagctctctcccgccgcagccggaggaaggttcacaggat
ggaatgaatgcgatgatggaccaggactccatgcagtctggagatggctatgcttctaac
gaaaacggctacaagatggaggcccagggtgatgagtattaa
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