Ictalurus punctatus (channel catfish): 108259414
Help
Entry
108259414 CDS
T04658
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
108259414
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_14
LRR_LRWD1
LRR_9
LRR_13
LRR_At5g56370
LRR_5
LRR_NLRC4
Motif
Other DBs
NCBI-GeneID:
108259414
NCBI-ProteinID:
XP_017314418
Ensembl:
ENSIPUG00000010624
UniProt:
W5U6D4
A0A2D0Q6U4
LinkDB
All DBs
Position
27:2913139..2927301
Genome browser
AA seq
580 aa
AA seq
DB search
MSSALGKDKDCKEKEAKVLTGKERDKEHKALGSLGKDGKEPKTKGKDAKDGKKDAGGAPP
AVAFSVDNTIKRPNPATGMRKKSSNAEVAKELVKCRDENATRLDLSKRSIHLLPSSVKEL
TLLTELYLYSNKLQSLPAELGCLSGLVTLALSENSLTSLPDSLDNLKRLRMLDLRHNKLR
EIPAVVYRLTSLTTLYLRFNRITAVEKDIRNLSKLTMLSIRENKIKQLPAEIGELCNLIT
LDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETIGNLSSINRLGLRYNRLSAIPRS
LAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNM
EHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDIC
GLASLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQ
LTTLPRGIGHLTNLTHLGLGENLLQHLPEEIGTLENLEELYLNDNPNLHGLPFELALCSK
LSIMSIENCPLSQLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgctttaggcaaagacaaagactgcaaagaaaaggaggccaaagtgctcacg
ggtaaggagcgcgacaaggagcacaaggcgctcggcagcctcgggaaggacggcaaggag
cccaaaaccaaagggaaagacgccaaagatgggaagaaggacgcgggaggcgcgccgccg
gctgtcgcgttctccgtggacaacacgataaagcggccgaacccggcaacgggaatgcgc
aagaagtccagcaacgccgaggtggccaaagagctggtgaaatgccgcgacgagaacgcg
acgcgcctggacctgtccaagcgctccatccacctactcccgtcgtccgtcaaggagctg
actctgctcaccgagctctacctgtacagtaacaagctgcagagcctcccggccgagctg
ggctgcctgtcgggcctggtgacgctggcgttgagcgagaactcgctcaccagcctgccg
gactcgctggacaacctgaagcggctgcgaatgctcgacctgcggcacaacaagctgcgg
gagatcccggccgtggtgtaccgcctcacgtctctcaccacgctgtacctgcgcttcaac
cgcatcaccgccgtcgagaaggacatccgcaacttgagcaagctcaccatgctgagcatc
cgcgagaacaagatcaaacagctgcccgccgagatcggagaactgtgcaacctgatcact
ctggacgtggcccacaatcagctggagcatcttcctaaagagatcggcaactgcacacag
atcaccaacctggacctacagcacaacgagctcctggacctacccgagactatcggcaat
ctgtcgagtataaaccgcttgggtctacggtacaacagactgtcggcgatcccccggtcg
ttagcgaagtgccgggagctggaagagttaaacctcgagaacaacaacatctccgtgctg
cctgagggcctgctctcgagcctggtgaacctgacgagtctgacgctggcacgcaactgt
ttccagtcgtacccggtgggcggcccgtcgcagttctccaccatctactcgctgaacatg
gagcacaaccgtatcaacaagatcccctttggcatcttctctcgtgccaaagtcctcagc
aagctcaacatgaaggacaaccagttgacgtcgctgccgctggactttgggacatggacc
agcatggtggagctgaacctggccaccaaccagctgactaagatccccgaggacatctgc
ggcctcgcttccctcgaggtcctcatattgtccaacaacctactgaagaagttacctcac
ggcatcgggaacttgcggaagctgcgcgagctcgacctggaggagaacaagctggagtcg
ctcccgaacgagatcgcctacctgaaagacctacagaaacttgtgttgaccaataatcag
ctgaccacgttgccgagagggatcggtcacctgaccaacctgactcacctgggactggga
gagaaccttctgcagcacctgcctgaggagatcggcactctggagaacctggaggaactg
tacctgaacgacaaccccaacctgcacggcctgcccttcgagctggcgctgtgcagcaag
ctgtccatcatgagcatcgagaactgccccctgagccagctcccgccgcagatcgtcgct
ggcggcccgtccttcatcatccagttcctcaagatgcagggcccgtaccgcgccatggtc
tga
DBGET
integrated database retrieval system
