Ictalurus punctatus (channel catfish): 108259588
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Entry
108259588 CDS
T04658
Name
(RefSeq) vacuolar protein sorting-associated protein 35 isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108259588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108259588
Membrane trafficking [BR:
ipu04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
108259588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
108259588
NCBI-ProteinID:
XP_053532457
Ensembl:
ENSIPUG00000014831
UniProt:
A0A9F7TGL5
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All DBs
Position
27:complement(17246425..17274094)
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AA seq
801 aa
AA seq
DB search
MLGYAKPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRT
SMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVG
VVYVRSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQAEEEMTGD
INDSIDFVLLNFAEMNKLWVRMQHQGHSRDREKREKERQELRILVGTNLVRLSQLEGVNV
EKYKQIVLAGVLEQVVNCRDSLAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQHVNV
KNIIIALIDRLALFAHREDGPGIPAEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLI
NLAMKCYPERVDYVDKVLESTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTV
LQLKHFPPLFEYFDYESRKSMSCYVLSNTLDYNTTILVQEQVDAILSLVSTLIQDQPDQP
AEDPDPEDFAEEQSLVGRFIHLLHSEDPDQQYLILNTARKHFGAGGNQRIRYTLPPLVFA
AYQLAFRYKDNASSDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIG
FENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMRCFSEENHEPLRTQCAL
AASKLLKKPDQCRAVSICAHLFWSGRNTDKNGDEIRDGKRVMECLKKALKIANQCMDPSL
QVQLFIEILNRYVCFYERENDAVTVQVLNQLIQKIREDLPNLEASEETEQINKHFHNTLE
HLRLQRESPESEGPAYEGLVL
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgctaggctatgctaagccgaccactcagcagtcaccccaggacgagcaggagaagctg
ttggacgaggcgatccaggccgtcaaagtgcagtccttccagatgaaacgctgcctggac
aagaacaagctgatggatgcactgaaacacgcctctaacatgctgggggagctcaggacc
tccatgctgtctcctaaaagctactacgaactgtacatggccatatcggacgagctgcac
tacctggaggtttacctgaccgacgagttcgctaagggccgtaaagtggccgacctgtat
gagctcgtacagtacgccgggaacatcatccccagactgtacttgctgataacggtggga
gtggtgtacgtgcgctcgttccctcagtcgcgcaaggacattttgaaggatctggtggag
atgtgtcggggtgttcagcatcctctgagaggtctgttcctgaggaactacctgctgcag
tgcacacgcaacatcctgcccgacgacggagaacaggccgaggaggagatgaccggcgac
atcaacgactcgatcgactttgtcctgctgaactttgctgagatgaataagctgtgggtg
cgaatgcagcaccagggccacagtcgtgaccgcgaaaagcgggagaaggagcggcaggag
ctgcgcatcctcgtcggcacaaacctcgtccgactcagccagctcgagggcgtcaacgtc
gagaaatacaaacagattgttctggctggagtcctggagcaggtggtgaactgcagagat
tctctggcacaggagtacctcatggagtgtattatacaggttttcccagacgagttccac
ctccagaccctgaacccatttctccgagcgtgtgctgagctccaccagcacgtcaatgtc
aagaacatcatcatagctcttattgacaggttggctctgtttgcccacagagaagacgga
cctggaatccctgccgagatcaaactctttgatattttctcccagcaagtggccacagtc
atccagtctcgtcaggacatgccgtcggaggacgtcgtgtctctgcaggtgtccctcatt
aacctggctatgaagtgctaccctgagcgcgtcgactacgtagacaaggttctcgagagc
accgtcgagatcttcaacaaactcaacctggagcacattgcgacgagcagcgccgtatcg
aaggagctcaccaggctgctgaagatccctgtggacacctacaacaacatcctgacggtc
ctgcagctcaaacacttcccgccgctcttcgagtacttcgattacgagtcacgcaagagc
atgagctgctacgtgctcagcaacacgctggactacaacaccaccatcctggtccaggag
caggtggatgcgatcctgagcctggtgtccacactgatccaggatcagccagatcagcct
gcagaggatcccgacccggaggactttgcagaggagcagagtttagtgggccgcttcatc
caccttctgcattccgaagatccggaccaacagtacctgatattaaacacagccaggaag
cacttcggagccgggggtaatcagaggatccgctacacgctgcccccactggtgttcgcc
gcttatcagctggccttccgctacaaagacaacgcctcctcggacgataagtgggagaag
aagtgccagaagatcttctccttcgcccatcagaccatcagcgcgctgatcaaggccgag
ctggccgagctgccgctgcgtctcttcctgcagggggcgctcgccgccggagagatcggc
ttcgagaaccacgagaccgtcgcctacgagttcatgtcccaggcgttctctctctatgag
gatgagatcagtgactctaaggcccagcttgccgccatcacgctgatcatcgggacgttc
gagcgcatgcgctgtttcagcgaggagaaccacgagcctctgagaacccagtgcgctctc
gctgcctccaaactgctgaaaaaacctgaccagtgccgcgccgtcagcatctgtgctcac
ctcttctggtccggacgcaacactgacaaaaacggagatgagatccgtgacgggaagcgt
gtgatggaatgcttgaagaaggccctgaagatcgccaaccagtgcatggacccgtctctg
caggtgcagctgttcatcgagatcctcaaccgctacgtgtgtttctacgagcgcgagaac
gacgcggtgaccgttcaggtcctgaaccagttgatccagaagatccgtgaggacctgccc
aacctggaggcgagcgaggagacggagcagatcaacaaacacttccacaacacactggag
cacctgcgcctgcagagggagtcgcccgagtcagagggccccgcctacgaggggctggtg
ctgtag
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