Ictalurus punctatus (channel catfish): 108259665
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Entry
108259665 CDS
T04658
Symbol
irx5a
Name
(RefSeq) iroquois-class homeodomain protein IRX-5a isoform X1
KO
K24889
iroquois-class homeodomain protein IRX
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108259665 (irx5a)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
108259665 (irx5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
PGA2
MRP-S32
Motif
Other DBs
NCBI-GeneID:
108259665
NCBI-ProteinID:
XP_017314807
Ensembl:
ENSIPUG00000016885
UniProt:
A0A2D0Q934
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All DBs
Position
27:complement(14639732..14650403)
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AA seq
472 aa
AA seq
DB search
MAYPQGYLYQPSASLALYSCPAYSTSVISGPRTEELGRSSSGSAFAPYAGSTAFSSASAA
YSSHLPYGADAAAAAATFTSYVSSPYDHTSGMAGSIGYHPYAAPLGSYPYGDPAYRKNAT
RDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTP
RNRSEDEEEDENIDLEKNDDDEPNKPIDKGDSTDTETDPKILHVGEAPCDRFQDDHHGKD
SDPLLSDSDLKEVDERADALVDPSKATTSSPSLVQRAHELGVHDRPPEVAHGASAVNHSN
ATSVIHSPPSAPKPKLWSLAEIATSSDRCRGGGGGGGGGDAGGTAQNALPAASAASPSRT
STQCALPSGAVLSRPLYYTSPFYAGYTNYGSFGHLHGSHGSVTSSAATHFNGISPSVLNR
AEALARESKARSQAQVDLCKDSPYELKKALDFSRCFSMVFSRDRLHLPHSAV
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggcgtaccctcagggctacttgtatcaaccgtccgcctctttggcgctctactcgtgc
ccagcgtacagcacgagcgtgatctcgggcccgcgcaccgaagagctcggtagatcgtcg
tcaggctctgcattcgcaccctacgccggatccacggcgttcagcagcgcctcagccgcc
tacagctcgcatctgccgtacggagcggacgctgcagccgccgcagccactttcacctcc
tacgtgagttccccctatgatcacacgtcaggcatggctggctctatcggttatcaccca
tacgcagctccactgggttcatacccgtatggtgaccctgcgtaccgtaagaacgcgacc
cgggacgccaccgcgactctgaaggcctggctcaacgagcaccgcaagaacccgtatcct
accaagggcgagaagataatgctggccatcatcaccaagatgaccctcacccaggtgtcc
acctggttcgccaacgccaggaggagactgaagaaggagaacaagatgacctggacgccg
cgcaacaggagcgaggacgaggaggaggacgagaacatcgacctggagaaaaacgacgac
gacgagcctaacaagcctattgacaagggggactcgacagatacggagacagatcccaaa
attctgcacgtgggtgaggcgccatgcgacagatttcaagacgaccatcacggcaaagac
tcggaccctctgctcagcgactcggacctgaaggaggtggacgagcgcgcggacgcactc
gtggacccgtcaaaagccaccacgtcgtctccgtctctcgtgcagcgggcccacgagctc
ggcgtgcacgacaggccgccggaagtggcgcacggcgcctccgcggtcaatcacagcaac
gcaacgtccgttatccattctcctccgtccgcgccaaagcctaaactgtggtctctggcg
gaaatagccacgtcttcggacaggtgcagaggaggaggcggcggtggcggcggcggcgac
gcagggggcacagctcagaacgctctaccggcggccagcgccgcgtctccaagccggacc
tcgacgcagtgcgcgctcccgagcggcgccgtgctctcccggcctctctactacacgtcg
ccgttttacgcgggctacacgaactacggctctttcggccacctgcacggcagccacggc
tccgtcacgagctcggcagcgacgcacttcaacggaataagtccgagcgttttgaaccga
gccgaggctcttgcccgagaaagcaaagcaaggagccaagcgcaggtagacctgtgcaaa
gactccccttatgaactcaagaaagccctggacttcagccgctgtttttctatggttttc
tcgagggacagattacacttgcctcattcggccgtctga
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